PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74258.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 764aa MW: 84047 Da PI: 9.1825

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.1	2e-12	147	222	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + +Li+a+r+ + +l+ r k ++ +W +v+ ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG74258.1 147 WSVDDIITLIRAKRDQDAHLQgmghayaRMKPREWKWLDVATRLKKVGVDREADRCWKKWDNLMQQFKKVHHFQGL 222 999*********777766643333336789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MQSSSPLSAG SSAGRRLGEC RETAPAVADV GDARDGREVW AEQRQLMRSV REESTTRGVQ 60 RLRVGEDGHN GEEAVGDAHD PDWNDNGAEG GEDDAGYISP SKQAAAMGGR GGKTKSYAGN 120 GRRGKRTAGR GSDAAGDVDG EGGRHFWSVD DIITLIRAKR DQDAHLQGMG HAYARMKPRE 180 WKWLDVATRL KKVGVDREAD RCWKKWDNLM QQFKKVHHFQ GLSGKQDFFQ LSGKDRMSKG 240 FNFNMDRAVY DEILGSTAKN HTINPKNVAD TGAQGGVRLP SASSADPKSV GDGDGGAEHD 300 DGDDGSTKRS LQTTGGAGGF GKRKSTSKQT FEAMTECMEK HGALMASTME SNSKRHCSIA 360 IRQCKALKAE IEVQKKQYAA SDEATQQRGE GSNVGEGATA GVKAGDVAGE GDDGAALVNR 420 LRQRNTREGM EAAAKLWVDD LRFWNEREGF AIVKLIAEVR GYLVAVARGE QPPPIRRSIV 480 LPHNSIPQHK ITDDSELNAA KERALKVQGI ALRVIHGWVF KSQNRQRGYH AAYQYALNLA 540 ATDIACAMWM GEDWRHCVSS MVAHHTLDLD MKLPLWFVGA DVEDRHEDDG LAAYQEASIQ 600 RLVGAFTSAV IIAEATDGGC VSHERLKTMA DAMRMMLTAT MWLMQMAGDD HRVHYHAWVF 660 VRRPTHGEAD ARRIHASLLR RASAHRASCD RNHRQVGKSP HHFDRPANVC PRMGIHRCEV 720 ITRRHAVFPD GGEEGGLVGH RPPGRRRRRE RRRIGKRGGV DDAF

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MQSSSPLSAG SSAGRRLGEC RETAPAVADV GDARDGREVW AEQRQLMRSV REESTTRGVQ  60
RLRVGEDGHN GEEAVGDAHD PDWNDNGAEG GEDDAGYISP SKQAAAMGGR GGKTKSYAGN  120
GRRGKRTAGR GSDAAGDVDG EGGRHFWSVD DIITLIRAKR DQDAHLQGMG HAYARMKPRE  180
WKWLDVATRL KKVGVDREAD RCWKKWDNLM QQFKKVHHFQ GLSGKQDFFQ LSGKDRMSKG  240
FNFNMDRAVY DEILGSTAKN HTINPKNVAD TGAQGGVRLP SASSADPKSV GDGDGGAEHD  300
DGDDGSTKRS LQTTGGAGGF GKRKSTSKQT FEAMTECMEK HGALMASTME SNSKRHCSIA  360
IRQCKALKAE IEVQKKQYAA SDEATQQRGE GSNVGEGATA GVKAGDVAGE GDDGAALVNR  420
LRQRNTREGM EAAAKLWVDD LRFWNEREGF AIVKLIAEVR GYLVAVARGE QPPPIRRSIV  480
LPHNSIPQHK ITDDSELNAA KERALKVQGI ALRVIHGWVF KSQNRQRGYH AAYQYALNLA  540
ATDIACAMWM GEDWRHCVSS MVAHHTLDLD MKLPLWFVGA DVEDRHEDDG LAAYQEASIQ  600
RLVGAFTSAV IIAEATDGGC VSHERLKTMA DAMRMMLTAT MWLMQMAGDD HRVHYHAWVF  660
VRRPTHGEAD ARRIHASLLR RASAHRASCD RNHRQVGKSP HHFDRPANVC PRMGIHRCEV  720
ITRRHAVFPD GGEEGGLVGH RPPGRRRRRE RRRIGKRGGV DDAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	745	752	RRRRRERR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-08	Trihelix family protein