PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74597.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-X1

Protein Properties

Length: 1987aa MW: 208603 Da PI: 7.5684

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.7	4.2e-07	1176	1194	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+ C+ GBG74597.1 1176 CGNHRCERPCHSGPCGACR 1194 ******************8 PP
2	zf-NF-X1	19.4	2.3e-06	1239	1256	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpCppC GBG74597.1 1239 CGEHACEQVCHTGPCPPC 1256 ****************** PP
3	zf-NF-X1	28.1	4.2e-09	1360	1378	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+Cq+lCHeGpCppC GBG74597.1 1360 CGRHTCQELCHEGPCPPCT 1378 ******************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 1987 aa Download sequence
MDGRSGDGST GVEHDREGGR FPARRDHMMT MDAIGGNGGG GGGVHHHRNG SNSDEADLLS 60 HHAGRISGAS SQRVRPQLQI AFSRHDGNEK VGSGGGGGVR DDNALTPGAG GGSIRRTQLR 120 GHRRSVSTSA VDLVVHERTY RSQAGSGGGS IRRQLPPQGP LSPAPHVVQR YQSPPPSSSS 180 SGEAEEGSSL SHQQQQYRQP NASREQLYHQ AQQQLQRPQS QAQQQQQHLQ LFSLFQMSSP 240 LSAGRVTDER GKVLVEIAAP ISSSRSNLGR SAETGGAGAL GGLCRGVGAS GSGGEKQSRG 300 GGMVAVGGET NVRGQQKRVS RGSATRSRHA RAATWDGQNN RLMDMINSRG IESGDRDSPR 360 CSPRDSPRAS PRSSPPRDWT RSRDVNFAGS AAGAGGRAGA VGGVAGLGAA ADRAPVDGVA 420 GHGGEAGGGV PGLPPASSTP RGGGHYRRSS WGHDRPPQSQ RERRDVRPND WKVRQDDELS 480 VSSDKSDDKS HTRFATIGAT SVEGGGRDFP PSTTGSQKKQ QPEEGPGAAN VGESGKQQPA 540 LLPSLTADHH QEAAAFCGDE RTGVPDAGED GTATPTPRSW GEGQGGGAVG KYQAPRGRDS 600 DSCPWRSAKG RSSEGERGGG GAPGVDERED PSVGAAKLQE LWRSGSGKQL TGLSKNRGAG 660 RDDEGEGCRD GTEDSVGRSV AGLVADESAE EKGAGETGRG RGREVDIGIQ RTLSGRGAAV 720 GGGGGGIGAP PGAIGMSRVN GSRRSRSRSE SFDWGGSRHR SDMSSNWRSG AGDDYGHGEG 780 GEEHWDAKER KRAREEREER RDRDEIRGGE RDWRDRESAW PPHRAPIFAG GEAEWRSGGG 840 GGGGGGGGGG GGGGSIRKKE TSGSSSSASR PSRLMFGSRA LPSLVQELED KLWKCLLDCP 900 VCSEPVSRSA TIWYCTACYG IFHLDCVRKW AAETIALFPP FSLPSSSMSG GLSAKPDVSC 960 SWHCPACKSF QTTSPAELAC KCFCGKKEEP TNNPFIVPHS CGETCHHPLD RSITGVGGAG 1020 AGGAKDGGGG AILTGAAASA SAEGGGYRCP HLCTLRCHPG PHITCTAMAP TVFCYCRKSE 1080 ITRKCAEYQK HGRSCGATCL RQMSCGRHLC PRVCHEGPCG LCEVTIKARC FCGRKEELQT 1140 CGRLNVKGDL SIPQPGAGAP LGVFSCGEKC GKMLACGNHR CERPCHSGPC GACRLLPSVL 1200 IRCPCGKSLI RDLLGGKERK SCLESVPTCE GRCRKKLSCG EHACEQVCHT GPCPPCEVLV 1260 DQKCRCGSSS RQVPCFQVTP SNAAVVASAA DTSATVTTCR ERSSGWFACN TKCGRVKNCG 1320 RHTCAAVCCS AMNRPTEEED GSAANESHRC MLVCGRKLRC GRHTCQELCH EGPCPPCTDY 1380 LSVDKGLSCA CGRAFIPPPV PCGTPQPACP FPCSKPQNCG HATTHLCHFG ACPPCTEPVE 1440 KECEGGHVVL RGVPCGSRDI RCNAICGKMR ACGRPCTRTC HRPPCDSPDV AAGEDREDGV 1500 RDRDRGGGED GRRQCSAGPI DLANCYNNDD AAEQSCVLTM VRRDPHWVAE VEARLRYLLT 1560 LESRWREVCS AGAIEVDSGG LRVHVFAYLE KERRDVIKAI AREWDMEALS VGWEPKRFVV 1620 VFATGRSQAP LRLPLSAALA FSSHANAVIE PVLDKDLDMD PDRVVTFFDW PEDLDVAAEL 1680 AKFDEECELV FLSERNAIAV FGQSAETAAA VLKRVDGAST YSGAVAPVAA AAAAATSSSA 1740 YLSATPSGGA TAWGRGGRAL WGRGPAIAEN RGVAASSEAQ GSSCGNVRDP VRAGLIGNGI 1800 KSGSFGNELN LAGGNTCLLW EGGVVSASSP ALSWMDTGGW RLPEWDNPPP PSSSSSAEAQ 1860 GFRVVRGEDA DQSSSRFNTP AEKSHSQGGA IMSTSEPARQ NAPSSSDDAG GIGRSREGVV 1920 GKGTSSAGCA SSRDESPRST SSVIVRNDDV AEDGRWETLA GLTLGEDSSK DDDEDCWEDA 1980 VGEEFIM

Sequence ? help Back to Top

Protein Sequence Length: 1987 aa Download sequence

MDGRSGDGST GVEHDREGGR FPARRDHMMT MDAIGGNGGG GGGVHHHRNG SNSDEADLLS  60
HHAGRISGAS SQRVRPQLQI AFSRHDGNEK VGSGGGGGVR DDNALTPGAG GGSIRRTQLR  120
GHRRSVSTSA VDLVVHERTY RSQAGSGGGS IRRQLPPQGP LSPAPHVVQR YQSPPPSSSS  180
SGEAEEGSSL SHQQQQYRQP NASREQLYHQ AQQQLQRPQS QAQQQQQHLQ LFSLFQMSSP  240
LSAGRVTDER GKVLVEIAAP ISSSRSNLGR SAETGGAGAL GGLCRGVGAS GSGGEKQSRG  300
GGMVAVGGET NVRGQQKRVS RGSATRSRHA RAATWDGQNN RLMDMINSRG IESGDRDSPR  360
CSPRDSPRAS PRSSPPRDWT RSRDVNFAGS AAGAGGRAGA VGGVAGLGAA ADRAPVDGVA  420
GHGGEAGGGV PGLPPASSTP RGGGHYRRSS WGHDRPPQSQ RERRDVRPND WKVRQDDELS  480
VSSDKSDDKS HTRFATIGAT SVEGGGRDFP PSTTGSQKKQ QPEEGPGAAN VGESGKQQPA  540
LLPSLTADHH QEAAAFCGDE RTGVPDAGED GTATPTPRSW GEGQGGGAVG KYQAPRGRDS  600
DSCPWRSAKG RSSEGERGGG GAPGVDERED PSVGAAKLQE LWRSGSGKQL TGLSKNRGAG  660
RDDEGEGCRD GTEDSVGRSV AGLVADESAE EKGAGETGRG RGREVDIGIQ RTLSGRGAAV  720
GGGGGGIGAP PGAIGMSRVN GSRRSRSRSE SFDWGGSRHR SDMSSNWRSG AGDDYGHGEG  780
GEEHWDAKER KRAREEREER RDRDEIRGGE RDWRDRESAW PPHRAPIFAG GEAEWRSGGG  840
GGGGGGGGGG GGGGSIRKKE TSGSSSSASR PSRLMFGSRA LPSLVQELED KLWKCLLDCP  900
VCSEPVSRSA TIWYCTACYG IFHLDCVRKW AAETIALFPP FSLPSSSMSG GLSAKPDVSC  960
SWHCPACKSF QTTSPAELAC KCFCGKKEEP TNNPFIVPHS CGETCHHPLD RSITGVGGAG  1020
AGGAKDGGGG AILTGAAASA SAEGGGYRCP HLCTLRCHPG PHITCTAMAP TVFCYCRKSE  1080
ITRKCAEYQK HGRSCGATCL RQMSCGRHLC PRVCHEGPCG LCEVTIKARC FCGRKEELQT  1140
CGRLNVKGDL SIPQPGAGAP LGVFSCGEKC GKMLACGNHR CERPCHSGPC GACRLLPSVL  1200
IRCPCGKSLI RDLLGGKERK SCLESVPTCE GRCRKKLSCG EHACEQVCHT GPCPPCEVLV  1260
DQKCRCGSSS RQVPCFQVTP SNAAVVASAA DTSATVTTCR ERSSGWFACN TKCGRVKNCG  1320
RHTCAAVCCS AMNRPTEEED GSAANESHRC MLVCGRKLRC GRHTCQELCH EGPCPPCTDY  1380
LSVDKGLSCA CGRAFIPPPV PCGTPQPACP FPCSKPQNCG HATTHLCHFG ACPPCTEPVE  1440
KECEGGHVVL RGVPCGSRDI RCNAICGKMR ACGRPCTRTC HRPPCDSPDV AAGEDREDGV  1500
RDRDRGGGED GRRQCSAGPI DLANCYNNDD AAEQSCVLTM VRRDPHWVAE VEARLRYLLT  1560
LESRWREVCS AGAIEVDSGG LRVHVFAYLE KERRDVIKAI AREWDMEALS VGWEPKRFVV  1620
VFATGRSQAP LRLPLSAALA FSSHANAVIE PVLDKDLDMD PDRVVTFFDW PEDLDVAAEL  1680
AKFDEECELV FLSERNAIAV FGQSAETAAA VLKRVDGAST YSGAVAPVAA AAAAATSSSA  1740
YLSATPSGGA TAWGRGGRAL WGRGPAIAEN RGVAASSEAQ GSSCGNVRDP VRAGLIGNGI  1800
KSGSFGNELN LAGGNTCLLW EGGVVSASSP ALSWMDTGGW RLPEWDNPPP PSSSSSAEAQ  1860
GFRVVRGEDA DQSSSRFNTP AEKSHSQGGA IMSTSEPARQ NAPSSSDDAG GIGRSREGVV  1920
GKGTSSAGCA SSRDESPRST SSVIVRNDDV AEDGRWETLA GLTLGEDSSK DDDEDCWEDA  1980
VGEEFIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	1e-156	NF-X1 family protein