PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74622.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 666aa MW: 72595.9 Da PI: 5.4594

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.4	7.8e-13	363	434	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +l+ r k ++ +W +v+++++ g+er++++C +kw l +++kk+++ GBG74622.1 363 WSVEHIIALIRAKRDQDAHLQgmdhpygRMKPREWKWNDVARRLKNVGVERKAEKCGKKWGYLMQQFKKVER 434 9***********666666643333336789***********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MADVFRKLLL LVVVFLLVVV VVFHVCFLGN APRRRRRRTL PMKLVRTDTR EGSPRGEGEQ 60 VVSRRAVESS SSVCRLSLGV GNSALSPHLQ PLPDSSDEEE REGRARTVPL GSGSTQEWVW 120 TELCGGSAGV CEQFFIELLR PGLDGEEGHG GVNLSSGLST GRCGSQTCTV IVNPHPDDDG 180 GQLTAVDRSS KSTGAQQWQG RSTSISRSAQ GRPQFMQSPS PVSAASNMGC RSAIVTEGGG 240 NLDDVGDDRD GRLVWAEQRR ELREGREKAI RRGVERLRMD RQAEEVEEPH AGLPFEEDDD 300 DNEGEAGDGN GGYASPSENS DMGGKGGKTK AKGGNGRGRP KKAQAKANDG DDDGEAEEKQ 360 NFWSVEHIIA LIRAKRDQDA HLQGMDHPYG RMKPREWKWN DVARRLKNVG VERKAEKCGK 420 KWGYLMQQFK KVEREGEGDF FKLSAKERAS KGFNFNIDRA VYEEIEGSTG FNETINPKNV 480 ADTGASHGVG SPSTSNGDPE AVGDDDAGAG GDDEEEGSTH GSSQTTGSPG GFEKRKSTRQ 540 KTFEAMIDCM EKHGNVMSSR AVSRGRGVGK QVTEGELVPK KGCHDPIKRR RGVQGGNGVV 600 GREVESDWVD EEERQEEDAD FEEEEEQTLK RKVKQRTGGA IRIEVGEGDA AEVAHDQPRT 660 PSNRQN

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MADVFRKLLL LVVVFLLVVV VVFHVCFLGN APRRRRRRTL PMKLVRTDTR EGSPRGEGEQ  60
VVSRRAVESS SSVCRLSLGV GNSALSPHLQ PLPDSSDEEE REGRARTVPL GSGSTQEWVW  120
TELCGGSAGV CEQFFIELLR PGLDGEEGHG GVNLSSGLST GRCGSQTCTV IVNPHPDDDG  180
GQLTAVDRSS KSTGAQQWQG RSTSISRSAQ GRPQFMQSPS PVSAASNMGC RSAIVTEGGG  240
NLDDVGDDRD GRLVWAEQRR ELREGREKAI RRGVERLRMD RQAEEVEEPH AGLPFEEDDD  300
DNEGEAGDGN GGYASPSENS DMGGKGGKTK AKGGNGRGRP KKAQAKANDG DDDGEAEEKQ  360
NFWSVEHIIA LIRAKRDQDA HLQGMDHPYG RMKPREWKWN DVARRLKNVG VERKAEKCGK  420
KWGYLMQQFK KVEREGEGDF FKLSAKERAS KGFNFNIDRA VYEEIEGSTG FNETINPKNV  480
ADTGASHGVG SPSTSNGDPE AVGDDDAGAG GDDEEEGSTH GSSQTTGSPG GFEKRKSTRQ  540
KTFEAMIDCM EKHGNVMSSR AVSRGRGVGK QVTEGELVPK KGCHDPIKRR RGVQGGNGVV  600
GREVESDWVD EEERQEEDAD FEEEEEQTLK RKVKQRTGGA IRIEVGEGDA AEVAHDQPRT  660
PSNRQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	RRRRRR
2	33	39	RRRRRRT
3	34	40	RRRRRRT
4	336	344	GRGRPKKAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein