PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74820.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1808aa MW: 197160 Da PI: 5.7288

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33	1.5e-10	1542	1614	2	67
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ ++ aLi+a+r+ + +l+++ +++ +W +v +++ + g+ r + +C +kw+nl +++kki + GBG74820.1 1542 WSVEHMVALIRAKRDQDAQLQAAGhafawmrSREWKWLDVRERLLKVGVDRPADKCGKKWDNLMQQFKKIHTF 1614 99*****************9733444555************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1808 aa Download sequence
MEGVEAGVAA AARRVHNARC AAITRGRAGR TSRRSWRGGD VWTDGDEVQC DVEEDDNSDV 60 LPLHAPNMGG RGGKGRASTN AGRRRKRSSA TSADAEEKGF NLNMDRVVYE EIKGAKQRSH 120 IISPSNVADT GGPEGVQLAS AHSATPESVG DGDATGDGDD EYDNSARGGS QTTGSPTDFG 180 KRKNVRQQTF EALSEWMEKH GALMASTMES ASRRQCEAME SASKRQCSIQ IRQCEAIEVD 240 VEVQKQHCAA SNEVSKLMCH ALLEITKAIR ERLPQGIFRL WIRVVVVSSS SPSSLSVFSV 300 MTNTRNSGKK KRGRNSQKME AAGVVKRGRH QAKKPKASSG GALVIGSSAQ EEWVTEASSG 360 QDDDFKSEAD TFHGRKRTLR ELSNARMVSG EEGVDTFHER KRTLRELSNA RRGHGVARGK 420 GEAGGDVGGG VAAREERGQP TTPGMRGAVP SKDVQAAQDI GKHPPMQAPS NPATPTAGQA 480 RRDEGARMNA AVRGQLATHI PAKEAAAVGA VVGTSATGAG GGGGDGRDNA XDNDPLINRQ 540 RRSGNLAALE AKAKLWVDDL RFWNETEGHG MFKIIQETRL HLISIAKGVK PSEIRKSIVL 600 PNATILQQKL EDISELGAAK ERASRVQTIA LRIIHGWIFK SPNRARGYHC SYGYVLNHIA 660 TDLARAIWCG EDWRVGVSPA VVHNTLELHM XLPIWYVGGV IHDRHEDDEM ASYQESTTQR 720 LVGAFTNVVD MGEGVDGGRI SYERLRNVAD CMRLLLSAAM WIMRMAGDNL RSHYEASHLV 780 ELIAKPTLIA SLHASFDARC HVLQCVNVVT EKMGKPPMTL VDPPVYIPEW VSCGVSFHND 840 ATLTSPELAR RLDWLGPGPA EIDDEDDEKD GGGESDVDDD DVDDDDDNGD DDDGDDNDDD 900 DDDRDDDDCD DDGDDDDGDD EDDDDDDDED DDDDVHDQDD DDDDDDDDDD DEVPFQIRHP 960 YAVDQVQPDG HQTKDHRPNT RPAAAYNIIR LPAASPRSIL GDRPEGRVER MRENPRAAPR 1020 ISPRSPRTPR GVSNEPLRGS LDTPWALKNP EELIVQSVLG ECSLEIDVKT FPRGVVEASP 1080 GYRHLAVFPK VPREVPRSGS FRENRDGDGA LRRRHNFVVW YIAGPAKVRA DISGRQHSTP 1140 AGTIATVRLG GGRGPRPFPV YPSPSPAPAG NGKASNGQPI RKSQRRTPVN ARSGPQCKEA 1200 EGVASRAHAR LLFVVVWVDV CILGRLPSRT RRKRGVRKSM AMDERRPNLA TLTDAYPSHR 1260 PAICTGVDRR AAGPSPYEGL APHMQPLPDS DEGEADVDVS NTVPLGSGST QEWTGSQLYD 1320 RCGAKYKQSF TSLLHEGAQD EERLPPVDLT FGLRSGNPSS ATRTVLVNPH PNDDAGQVTL 1380 VGRGTRGGSA PQGTSEKTRE RPRLGGDNVP RPVEQGVTEE DFPFEGVHGD GRRVWKESRQ 1440 ELRRQQEESI TQGVQRLHVG ERAGQADAVG GGGDVWTDGD EVQCDVEEDD SGDVFPLHAP 1500 NMGGRGGRGR ASTNVGRRRK RPSATSADAE GEGDREGGHN FWSVEHMVAL IRAKRDQDAQ 1560 LQAAGHAFAW MRSREWKWLD VRERLLKVGV DRPADKCGKK WDNLMQQFKK IHTFMGMSGK 1620 EDFFQLTSQQ RAEKRFNFNM DRAVYEEIEG AKERSHTISP SNVADTGGAG GVQLPSAQSA 1680 ALKSMGDRDA FGDGNDEDNS SACGGSQTTG SPAGFGKRKN VGQQTFEALS ECMEKHGALM 1740 ASTMESTSRR QCEAMESASK RQCSIQIRQC EAIEAEVEVQ KQHRAASNEV SKLMCHALLE 1800 IAKAIRER

Sequence ? help Back to Top

Protein Sequence Length: 1808 aa Download sequence

MEGVEAGVAA AARRVHNARC AAITRGRAGR TSRRSWRGGD VWTDGDEVQC DVEEDDNSDV  60
LPLHAPNMGG RGGKGRASTN AGRRRKRSSA TSADAEEKGF NLNMDRVVYE EIKGAKQRSH  120
IISPSNVADT GGPEGVQLAS AHSATPESVG DGDATGDGDD EYDNSARGGS QTTGSPTDFG  180
KRKNVRQQTF EALSEWMEKH GALMASTMES ASRRQCEAME SASKRQCSIQ IRQCEAIEVD  240
VEVQKQHCAA SNEVSKLMCH ALLEITKAIR ERLPQGIFRL WIRVVVVSSS SPSSLSVFSV  300
MTNTRNSGKK KRGRNSQKME AAGVVKRGRH QAKKPKASSG GALVIGSSAQ EEWVTEASSG  360
QDDDFKSEAD TFHGRKRTLR ELSNARMVSG EEGVDTFHER KRTLRELSNA RRGHGVARGK  420
GEAGGDVGGG VAAREERGQP TTPGMRGAVP SKDVQAAQDI GKHPPMQAPS NPATPTAGQA  480
RRDEGARMNA AVRGQLATHI PAKEAAAVGA VVGTSATGAG GGGGDGRDNA XDNDPLINRQ  540
RRSGNLAALE AKAKLWVDDL RFWNETEGHG MFKIIQETRL HLISIAKGVK PSEIRKSIVL  600
PNATILQQKL EDISELGAAK ERASRVQTIA LRIIHGWIFK SPNRARGYHC SYGYVLNHIA  660
TDLARAIWCG EDWRVGVSPA VVHNTLELHM XLPIWYVGGV IHDRHEDDEM ASYQESTTQR  720
LVGAFTNVVD MGEGVDGGRI SYERLRNVAD CMRLLLSAAM WIMRMAGDNL RSHYEASHLV  780
ELIAKPTLIA SLHASFDARC HVLQCVNVVT EKMGKPPMTL VDPPVYIPEW VSCGVSFHND  840
ATLTSPELAR RLDWLGPGPA EIDDEDDEKD GGGESDVDDD DVDDDDDNGD DDDGDDNDDD  900
DDDRDDDDCD DDGDDDDGDD EDDDDDDDED DDDDVHDQDD DDDDDDDDDD DEVPFQIRHP  960
YAVDQVQPDG HQTKDHRPNT RPAAAYNIIR LPAASPRSIL GDRPEGRVER MRENPRAAPR  1020
ISPRSPRTPR GVSNEPLRGS LDTPWALKNP EELIVQSVLG ECSLEIDVKT FPRGVVEASP  1080
GYRHLAVFPK VPREVPRSGS FRENRDGDGA LRRRHNFVVW YIAGPAKVRA DISGRQHSTP  1140
AGTIATVRLG GGRGPRPFPV YPSPSPAPAG NGKASNGQPI RKSQRRTPVN ARSGPQCKEA  1200
EGVASRAHAR LLFVVVWVDV CILGRLPSRT RRKRGVRKSM AMDERRPNLA TLTDAYPSHR  1260
PAICTGVDRR AAGPSPYEGL APHMQPLPDS DEGEADVDVS NTVPLGSGST QEWTGSQLYD  1320
RCGAKYKQSF TSLLHEGAQD EERLPPVDLT FGLRSGNPSS ATRTVLVNPH PNDDAGQVTL  1380
VGRGTRGGSA PQGTSEKTRE RPRLGGDNVP RPVEQGVTEE DFPFEGVHGD GRRVWKESRQ  1440
ELRRQQEESI TQGVQRLHVG ERAGQADAVG GGGDVWTDGD EVQCDVEEDD SGDVFPLHAP  1500
NMGGRGGRGR ASTNVGRRRK RPSATSADAE GEGDREGGHN FWSVEHMVAL IRAKRDQDAQ  1560
LQAAGHAFAW MRSREWKWLD VRERLLKVGV DRPADKCGKK WDNLMQQFKK IHTFMGMSGK  1620
EDFFQLTSQQ RAEKRFNFNM DRAVYEEIEG AKERSHTISP SNVADTGGAG GVQLPSAQSA  1680
ALKSMGDRDA FGDGNDEDNS SACGGSQTTG SPAGFGKRKN VGQQTFEALS ECMEKHGALM  1740
ASTMESTSRR QCEAMESASK RQCSIQIRQC EAIEAEVEVQ KQHRAASNEV SKLMCHALLE  1800
IAKAIRER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	336	KKKRGRNSQKMEAAGVVKRGRHQAKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-07	Trihelix family protein