PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG75969.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 629aa MW: 66028.4 Da PI: 6.4458

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG75969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.8	2.1e-11	377	453	1	70
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 +W ++e+ L+++r+ ++ er +++k++ + W+e+s+ ++++g +r+p++C+ +++ + + + ++k+++ + GBG75969.1 377 KWGEEETIFLMKIRSeqlaekaKDSERKGAAKSNTKVWDEISALLKREGSNREPEECQRRFNTVGRWFNRVKDNNDR 453 7************77776555555555678***************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MDGSQHPGGV DASDGTHTLG GRDTFPFVQP SMVLRGDAGE DSLAAVRTQL FLCATAADNA 60 LSGRPEHVDR QLSSQSSAIL FAASVGDASP HPITASRVIA AASPPVITAG PVVHDVTASS 120 IRAGSRDSIN PHRYGIHGIA RVEPPHLTTR LVHATGMEMD MCPPLLAPIH LPPLHPSTVV 180 PSHIMPTRYM ESSPALIVPS VAAEQRTSTP STPLSHSSPH LHPQHCITTH PSSHHSPLTS 240 NPVHSSATVS GIDIPILSSS SSSDLSLSPT MPPKLDGTSH PRACGSGDAF RSSAQDCVDD 300 EVLAPAVGEV FGPTGRDHIA GDKPCSQEVN CSAGSRTEEN PAAKDVKSTA GVCVDGGDPA 360 AMNVKSPVVK RTAPKGKWGE EETIFLMKIR SEQLAEKAKD SERKGAAKSN TKVWDEISAL 420 LKREGSNREP EECQRRFNTV GRWFNRVKDN NDRSGLLSYW KMSPSQRVGA NLNFNMRRTW 480 YDVLAPYNKH SQTANPTHLV DTGLEEEAQT SAAVAVPEGV VGGEVRPQVP PQAPVNAGGD 540 ERAMGGGSGG SSDNHGGGHG AGSSTVTGVT PTTSFQQTAE ERECEGAVLG RSDMCDEGTH 600 GCFACFGIGA EQVQQGLHGA ALRYAGSTL

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MDGSQHPGGV DASDGTHTLG GRDTFPFVQP SMVLRGDAGE DSLAAVRTQL FLCATAADNA  60
LSGRPEHVDR QLSSQSSAIL FAASVGDASP HPITASRVIA AASPPVITAG PVVHDVTASS  120
IRAGSRDSIN PHRYGIHGIA RVEPPHLTTR LVHATGMEMD MCPPLLAPIH LPPLHPSTVV  180
PSHIMPTRYM ESSPALIVPS VAAEQRTSTP STPLSHSSPH LHPQHCITTH PSSHHSPLTS  240
NPVHSSATVS GIDIPILSSS SSSDLSLSPT MPPKLDGTSH PRACGSGDAF RSSAQDCVDD  300
EVLAPAVGEV FGPTGRDHIA GDKPCSQEVN CSAGSRTEEN PAAKDVKSTA GVCVDGGDPA  360
AMNVKSPVVK RTAPKGKWGE EETIFLMKIR SEQLAEKAKD SERKGAAKSN TKVWDEISAL  420
LKREGSNREP EECQRRFNTV GRWFNRVKDN NDRSGLLSYW KMSPSQRVGA NLNFNMRRTW  480
YDVLAPYNKH SQTANPTHLV DTGLEEEAQT SAAVAVPEGV VGGEVRPQVP PQAPVNAGGD  540
ERAMGGGSGG SSDNHGGGHG AGSSTVTGVT PTTSFQQTAE ERECEGAVLG RSDMCDEGTH  600
GCFACFGIGA EQVQQGLHGA ALRYAGSTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-07	Trihelix family protein