PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG76579.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 948aa MW: 102007 Da PI: 7.8001

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG76579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.5	6.4e-12	267	342	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aLi+a+r+ + +l+ r k ++ +W +v +++++ g+er++++C +kw+nl +++kk+ + ++ GBG76579.1 267 WSVDDMVALIRAKRDQDAHLQgmgtayaRMKPREWKWLDVEQRLKKVGVERKAERCGKKWDNLMQQFKKVHHFQGL 342 999999******8888777444333356899999*******************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence
MDGRQAVCKS VGGEGGGQRA GQSPSRGSRA VERSEYAHLP PHLQPLPDTS DEEEDDRRSR 60 AVPLGSGSTQ EWTATELCGS REPSYGQSYT QLLQQGLSGD EGDGASSVRV ASGNNKDPRT 120 QQYRASSASR GASPRPSWML SPSPLSGNSS AARNRGECGE HDCEIEERGD ERDGREVWQE 180 QRRMLHPRRQ ESITRGVQRL RVVDDENDGD APDVGGNDQD LNDDDCGGGE DDAGQASVRN 240 GGRGKKAMGK GSDVEADGDA EGGRHFWSVD DMVALIRAKR DQDAHLQGMG TAYARMKPRE 300 WKWLDVEQRL KKVGVERKAE RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFP FTGKERLSKG 360 FSFNMDRAVY DEILGSTAKS YTINPKNVAD TGAPGGVRLP STNSGDPESV GDGDAAVGLD 420 DDDDGSTRGS SQTTGGPAGF GKRKSTRQQT FDVLSECMEK HRALVASTME SNSKRQCSIQ 480 IQQCEALEAE VEVQKKHYAA SDEVSKLMCH ALLEIAKAIR ERSGRGRSAG KQAVDASLRD 540 KRGRHVANKQ RKLVQGASAI AIHADAEDWV AEGDDSHVES DFAESEEIPM KRKSSKRQTG 600 ALRIDDIGER RSAGCRGANE QDVNVAARPA TGRAVGSAAT QQNRAPLPRV NEPPASQEVF 660 VRGRTPSTPR QTTATEVGVA AQGIAQGITS RSPARDERRA STVVAARAAD VAKAGAATAG 720 GASQAAEGGR SVGAATVRAS HAVEGAREGG GNAGEGSRAR AVAGVGEDDE ALTNRLPLWF 780 VGAYIEDRHE DDELVAYQEA SVQRLVGAFT SAVSTAEGVD GGRVSHERLK SVAEAMQVML 840 AATMWLMRMG GGDRRAHYNT WVFVQLTAKP TLIASMHRSF DARRHIVQAA TAITDKLAKP 900 PITLLAPPLY IPDWVSIGVK FLARRHFVFP NGGSKAPLVG HRATGRRR

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence

MDGRQAVCKS VGGEGGGQRA GQSPSRGSRA VERSEYAHLP PHLQPLPDTS DEEEDDRRSR  60
AVPLGSGSTQ EWTATELCGS REPSYGQSYT QLLQQGLSGD EGDGASSVRV ASGNNKDPRT  120
QQYRASSASR GASPRPSWML SPSPLSGNSS AARNRGECGE HDCEIEERGD ERDGREVWQE  180
QRRMLHPRRQ ESITRGVQRL RVVDDENDGD APDVGGNDQD LNDDDCGGGE DDAGQASVRN  240
GGRGKKAMGK GSDVEADGDA EGGRHFWSVD DMVALIRAKR DQDAHLQGMG TAYARMKPRE  300
WKWLDVEQRL KKVGVERKAE RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFP FTGKERLSKG  360
FSFNMDRAVY DEILGSTAKS YTINPKNVAD TGAPGGVRLP STNSGDPESV GDGDAAVGLD  420
DDDDGSTRGS SQTTGGPAGF GKRKSTRQQT FDVLSECMEK HRALVASTME SNSKRQCSIQ  480
IQQCEALEAE VEVQKKHYAA SDEVSKLMCH ALLEIAKAIR ERSGRGRSAG KQAVDASLRD  540
KRGRHVANKQ RKLVQGASAI AIHADAEDWV AEGDDSHVES DFAESEEIPM KRKSSKRQTG  600
ALRIDDIGER RSAGCRGANE QDVNVAARPA TGRAVGSAAT QQNRAPLPRV NEPPASQEVF  660
VRGRTPSTPR QTTATEVGVA AQGIAQGITS RSPARDERRA STVVAARAAD VAKAGAATAG  720
GASQAAEGGR SVGAATVRAS HAVEGAREGG GNAGEGSRAR AVAGVGEDDE ALTNRLPLWF  780
VGAYIEDRHE DDELVAYQEA SVQRLVGAFT SAVSTAEGVD GGRVSHERLK SVAEAMQVML  840
AATMWLMRMG GGDRRAHYNT WVFVQLTAKP TLIASMHRSF DARRHIVQAA TAITDKLAKP  900
PITLLAPPLY IPDWVSIGVK FLARRHFVFP NGGSKAPLVG HRATGRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-09	Trihelix family protein