PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77330.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 368aa MW: 38047.6 Da PI: 8.261

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	70	91	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+ t C+yGd+C+F H GBG77330.1 70 KACTKFFSTSGCPYGDNCHFLH 91 579999999************* PP
2	zf-CCCH	33.3	8.3e-11	125	151	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk +lC+++++ G C++G++C+FaHg+ GBG77330.1 125 YKSRLCNRYREPGGCRFGEKCHFAHGE 151 99***********************96 PP
3	zf-CCCH	23.2	1.2e-07	307	331	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk++ C +f GtC +GdrC+FaHg GBG77330.1 307 YKMKMCENFPG-GTCTFGDRCHFAHG 331 67777777776.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEGSGPPQKR LRMGGHGSGD PTDGECHKFN TPEGCPYGDR CRFRHPTSQG EDARQDGAGP 60 QPPAPGSRSK ACTKFFSTSG CPYGDNCHFL HYVPGGPNAV AQALAAAQNG KGSGLVDAGS 120 NLGGYKSRLC NRYREPGGCR FGEKCHFAHG EYELQPGDLT LGGDIHGGVW QTGRGGSGSA 180 LGGQFGGMLG GGRENGRGLF PLGAGPEMSS SMSAAVSFGQ STTTKISIDA SLVGAIIGKA 240 GANVKQICKL TGAKLSVRDH ETDTNLRNVE MEGSLEQIEK ASSMVRQFLM QRDLTPSKPS 300 GLGPHNYKMK MCENFPGGTC TFGDRCHFAH GAHELKDPPP DARGAGGVGG AGGGMLGGSL 360 SKTIGTVM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEGSGPPQKR LRMGGHGSGD PTDGECHKFN TPEGCPYGDR CRFRHPTSQG EDARQDGAGP  60
QPPAPGSRSK ACTKFFSTSG CPYGDNCHFL HYVPGGPNAV AQALAAAQNG KGSGLVDAGS  120
NLGGYKSRLC NRYREPGGCR FGEKCHFAHG EYELQPGDLT LGGDIHGGVW QTGRGGSGSA  180
LGGQFGGMLG GGRENGRGLF PLGAGPEMSS SMSAAVSFGQ STTTKISIDA SLVGAIIGKA  240
GANVKQICKL TGAKLSVRDH ETDTNLRNVE MEGSLEQIEK ASSMVRQFLM QRDLTPSKPS  300
GLGPHNYKMK MCENFPGGTC TFGDRCHFAH GAHELKDPPP DARGAGGVGG AGGGMLGGSL  360
SKTIGTVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-41	C3H family protein