PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77408.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 817aa MW: 87769.4 Da PI: 9.3251

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.6	4.4e-10	353	424	2	65
trihelix 2 WtkqevlaLiearremeerlrr.......gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkik 65 Wt ++ aLi+a+r+ +++l k k +We+v k++ + g+ +r+++ C +kw+nl +++k + GBG77408.1 353 WTVEHMIALIRAKRDQDSHLAGlghnyrwMKTKTWKWEDVEKRLVQMGVtSRKAVDCGKKWDNLYQQFKSGR 424 ************888888843222222589********99999899***************866 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MADLYRRLPL LLLVALPLLI VVVFHICFLG RVPGRKQTRR TPKRSTKMDK LQTKTTMSVG 60 GGGSSRQRCN NTKGGRRSYD PTLYSHLRSH EIPLPPIDDD VDDPRSSTVP LGSGSMQDWM 120 GSQVYRHAST PTYTDLLEGQ TPAGYDAGLV DLSFGLRSGS GEGLTHTVVV NSASASKHTS 180 PSVRAAGPAD SRGFVLLRRV ALSTASVAAS RTKTIGLAGC RMTTPGGAIE GEGDDNERDA 240 AEVVGRQFWD DEXQRLRSTN TASITIGVAR ISVGAEDEFE DCAGGGGEEI AADDGGDDND 300 EDDDGEMEIR PVGRKRGGSM ARTKVRESRT GRKGKKCSEE SLAGDGTKSR DFWTVEHMIA 360 LIRAKRDQDS HLAGLGHNYR WMKTKTWKWE DVEKRLVQMG VTSRKAVDCG KKWDNLYQQF 420 KSGRAVVDGL ACPWCAARPR TVPKGIPGGI PYRWHSIATG PKAPSVHGIV VAGVVICLSX 480 YDRRVWAPRA STSSXIHVSQ AACHRTGPSS TPVKRRIINV VRRQGAXHRP PPAPSFPSST 540 WSFVHVSQAP QLFAFGTHFF VDDMAPCGAS GKAKRNSGSG DGGETQKGRG HIPKSKRPRF 600 DDDSSEHSGD LHXEEESMVD AQGADVMKQL GFGRDGVSRD QLATPKQCLV GGVAVSLART 660 PKSAGIVMTD ARVARQVPPK VGQVAPRQPI PALQAGTSGV EKTPSAQKVD TTAGGGRTAV 720 ADNTTGSGVV EGAGEGRVDD VRLDDGRKDA RGGGDDDDDR PVSAMVKKGV KEDDLEERSK 780 LWIDCDAFWG QGPGKPLREA FGGVVTSTVV IFMRVLF

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MADLYRRLPL LLLVALPLLI VVVFHICFLG RVPGRKQTRR TPKRSTKMDK LQTKTTMSVG  60
GGGSSRQRCN NTKGGRRSYD PTLYSHLRSH EIPLPPIDDD VDDPRSSTVP LGSGSMQDWM  120
GSQVYRHAST PTYTDLLEGQ TPAGYDAGLV DLSFGLRSGS GEGLTHTVVV NSASASKHTS  180
PSVRAAGPAD SRGFVLLRRV ALSTASVAAS RTKTIGLAGC RMTTPGGAIE GEGDDNERDA  240
AEVVGRQFWD DEXQRLRSTN TASITIGVAR ISVGAEDEFE DCAGGGGEEI AADDGGDDND  300
EDDDGEMEIR PVGRKRGGSM ARTKVRESRT GRKGKKCSEE SLAGDGTKSR DFWTVEHMIA  360
LIRAKRDQDS HLAGLGHNYR WMKTKTWKWE DVEKRLVQMG VTSRKAVDCG KKWDNLYQQF  420
KSGRAVVDGL ACPWCAARPR TVPKGIPGGI PYRWHSIATG PKAPSVHGIV VAGVVICLSX  480
YDRRVWAPRA STSSXIHVSQ AACHRTGPSS TPVKRRIINV VRRQGAXHRP PPAPSFPSST  540
WSFVHVSQAP QLFAFGTHFF VDDMAPCGAS GKAKRNSGSG DGGETQKGRG HIPKSKRPRF  600
DDDSSEHSGD LHXEEESMVD AQGADVMKQL GFGRDGVSRD QLATPKQCLV GGVAVSLART  660
PKSAGIVMTD ARVARQVPPK VGQVAPRQPI PALQAGTSGV EKTPSAQKVD TTAGGGRTAV  720
ADNTTGSGVV EGAGEGRVDD VRLDDGRKDA RGGGDDDDDR PVSAMVKKGV KEDDLEERSK  780
LWIDCDAFWG QGPGKPLREA FGGVVTSTVV IFMRVLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	RRTPKRS