PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77605.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 488aa MW: 51615.8 Da PI: 8.0139

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	72	96	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +f++ G C+yG++C+F H+ GBG77605.1 72 GEKECAYFMKHGNCSYGASCRFDHP 96 7899********************9 PP
2	zf-CCCH	35.6	1.6e-11	125	151	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G +CkF+H++ GBG77605.1 125 PGEAECAFYMRNGECKFGITCKFHHPK 151 5789*********************96 PP
3	zf-CCCH	39.7	8.3e-13	215	240	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG+ CkF+H++ GBG77605.1 215 GETDCSFYMKTGSCKYGAVCKFNHPE 240 6789********************96 PP
4	zf-CCCH	37.8	3.2e-12	353	379	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff+r+G+Ck+G++CkF+H++ GBG77605.1 353 PGQPECQFFLRNGECKFGASCKFHHPR 379 5789*********************96 PP
5	zf-CCCH	35.2	2.1e-11	408	433	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++t tCkyG +CkF H+p GBG77605.1 408 GETACAYYMKTATCKYGVQCKFDHPP 433 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MESMGLLPVG SYYSAPPQPS YSMNTMSTMN AIATNKRPYD DGLGSVSMLA KKARPGGEGL 60 GGPQPPYPQR PGEKECAYFM KHGNCSYGAS CRFDHPLWVP SGGVPGWKEN TSGTGGSDTP 120 YPERPGEAEC AFYMRNGECK FGITCKFHHP KERSGKARTN ETPPPGSAST GKDKDSGKFN 180 AIANGSSRNG VMGKDRGLYG KPAALSSKGL PIRPGETDCS FYMKTGSCKY GAVCKFNHPE 240 VAPSAHSCLD GDSSWNTSSN LEPYLMQYYK SSGLEDFNVR SGITQSSTWP AGGAIMAASQ 300 HPQLISSTWG PQGPIAMPTQ GMLGVELPMN PQGGLGLSYG GAPAVAASYP ERPGQPECQF 360 FLRNGECKFG ASCKFHHPRK GAVQPVALPI APPPGVKLTK AGLPRRPGET ACAYYMKTAT 420 CKYGVQCKFD HPPPGEAVAL ATAAAKEGKD GNQDKNAEDG DKSRSGAAGA GSDEVENTDH 480 DLKHEEDS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MESMGLLPVG SYYSAPPQPS YSMNTMSTMN AIATNKRPYD DGLGSVSMLA KKARPGGEGL  60
GGPQPPYPQR PGEKECAYFM KHGNCSYGAS CRFDHPLWVP SGGVPGWKEN TSGTGGSDTP  120
YPERPGEAEC AFYMRNGECK FGITCKFHHP KERSGKARTN ETPPPGSAST GKDKDSGKFN  180
AIANGSSRNG VMGKDRGLYG KPAALSSKGL PIRPGETDCS FYMKTGSCKY GAVCKFNHPE  240
VAPSAHSCLD GDSSWNTSSN LEPYLMQYYK SSGLEDFNVR SGITQSSTWP AGGAIMAASQ  300
HPQLISSTWG PQGPIAMPTQ GMLGVELPMN PQGGLGLSYG GAPAVAASYP ERPGQPECQF  360
FLRNGECKFG ASCKFHHPRK GAVQPVALPI APPPGVKLTK AGLPRRPGET ACAYYMKTAT  420
CKYGVQCKFD HPPPGEAVAL ATAAAKEGKD GNQDKNAEDG DKSRSGAAGA GSDEVENTDH  480
DLKHEEDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-72	C3H family protein