PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77628.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 609aa MW: 66390.2 Da PI: 8.6349

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.5	2.3e-10	390	440	16	66
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 m++++ r k ++ +W++v+++ + g+ r++++C +kw+nl +++kk+ + GBG77628.1 390 GMGHAYARMKPREWKWQDVAQRFKNVGVDRNAEKCGKKWDNLMQQFKKVHH 440 6788888999**************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MSQRSADTNI SGRSPAPNYT LAVGDRRRPR GFVAKSGRPF AALRSTAAAA APRCPVAAPR 60 GSLPRVHPWE RAAASTKTRS SMKDARMEAR QAIPRSGGEQ VGGRRCGGSL STVGRASQRV 120 GYDALPPHLQ PLPGSSDEEE EVERRPQTVS YGSGSTQEWT ATELCGTGGG VYEQSFTELL 180 RPGLGEDEGD GRVNLSFGLS TGRSTTPSCT VLVRPHPGDE GGQLTAVDRS ARTRALASET 240 AGANRNSSTA QPWATSLSKG AQGQPEWMQL PSPLSAASEV ARGRGVGVYG GTDFLDVGDG 300 RDGREVWRDL RRDHRLRREE YITRGVERLY VGDRENEKET DDPPAEADDD DDGDDNDVDC 360 GAGSPSLPAT MLVRGRRKGR ERGAVAKATG MGHAYARMKP REWKWQDVAQ RFKNVGVDRN 420 AEKCGKKWDN LMQQFKKVHH FQSLSGGADF FQLSSKERAS RGFNFTMDRA VYDEIEGSTG 480 MNHTIHPKNV ADTGASGGVR PPSTSYVDPE SVADGEGGAG REDDEEASTR GSSQTTGTPD 540 GSRKRKSARQ QTFKALTEWM EKHGELMEST MESASKRQCS IQDAMWKSFY WQLFLFIGFR 600 HATVQRWHA

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MSQRSADTNI SGRSPAPNYT LAVGDRRRPR GFVAKSGRPF AALRSTAAAA APRCPVAAPR  60
GSLPRVHPWE RAAASTKTRS SMKDARMEAR QAIPRSGGEQ VGGRRCGGSL STVGRASQRV  120
GYDALPPHLQ PLPGSSDEEE EVERRPQTVS YGSGSTQEWT ATELCGTGGG VYEQSFTELL  180
RPGLGEDEGD GRVNLSFGLS TGRSTTPSCT VLVRPHPGDE GGQLTAVDRS ARTRALASET  240
AGANRNSSTA QPWATSLSKG AQGQPEWMQL PSPLSAASEV ARGRGVGVYG GTDFLDVGDG  300
RDGREVWRDL RRDHRLRREE YITRGVERLY VGDRENEKET DDPPAEADDD DDGDDNDVDC  360
GAGSPSLPAT MLVRGRRKGR ERGAVAKATG MGHAYARMKP REWKWQDVAQ RFKNVGVDRN  420
AEKCGKKWDN LMQQFKKVHH FQSLSGGADF FQLSSKERAS RGFNFTMDRA VYDEIEGSTG  480
MNHTIHPKNV ADTGASGGVR PPSTSYVDPE SVADGEGGAG REDDEEASTR GSSQTTGTPD  540
GSRKRKSARQ QTFKALTEWM EKHGELMEST MESASKRQCS IQDAMWKSFY WQLFLFIGFR  600
HATVQRWHA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	542	547	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein