PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78292.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 610aa MW: 66416.2 Da PI: 4.097

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.2	1.2e-09	245	318	2	68
trihelix 2 WtkqevlaLiearremeerlrr.g......klkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ + l+L++ +re + +l g + k+ +W++++k+m++ g r + C +kw nl + ykki++ + GBG78292.1 245 WSTNDQLLLVRCKREQDMHLAGlGhnygwmRTKEWKWDDIAKRMAKAGRPRDADHCMKKWGNLFQNYKKIQRFK 318 88888888888888777777642122223369*************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MLSQTLRARG SASNEGGEFT SLLQQGLGDD DDGGVDLRFS LSSNSASEAT RTFIIDADPS 60 PCGLQRAGSQ HTEQSTLHSG ASVTAGVGPS LPARQHGWIA PLAERMTSTC PVRSGVAAGS 120 ARIGGGWSSM SNRTTPTQLD VRDEPACRSL VRPGPTVENI TRGVSNMRAH SDGGDDDAGG 180 GDDADKGFRE HADAWDVDDN IHIRPLGKTT ERGKGRSKGA VCGRSVGRGG RGGVSDDGGK 240 SAMYWSTNDQ LLLVRCKREQ DMHLAGLGHN YGWMRTKEWK WDDIAKRMAK AGRPRDADHC 300 MKKWGNLFQN YKKIQRFKNA SGGANFFRLS NEERKENNFK FRMDRVLYNK IHGGMLGNRT 360 ILTPNVADTG SPDEVQLPRR GAAGGESVGS EAGGDGCPEE RSSTRDSDNN AGSGGASRKR 420 KNARQQALEL IADVMDRHGE LMSSTIDSSS KRQCNILTRQ CDILEQEVVV KKTHYMASDE 480 TQRMMCHALM EIVAAIRDDD GDDDDDDGDD GGDDDDDDDD DDDDGDHDDH DDDANSDDDD 540 DGDDVDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDGHRENDG EDNRHDHEND 600 DDDDDAAVDP

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MLSQTLRARG SASNEGGEFT SLLQQGLGDD DDGGVDLRFS LSSNSASEAT RTFIIDADPS  60
PCGLQRAGSQ HTEQSTLHSG ASVTAGVGPS LPARQHGWIA PLAERMTSTC PVRSGVAAGS  120
ARIGGGWSSM SNRTTPTQLD VRDEPACRSL VRPGPTVENI TRGVSNMRAH SDGGDDDAGG  180
GDDADKGFRE HADAWDVDDN IHIRPLGKTT ERGKGRSKGA VCGRSVGRGG RGGVSDDGGK  240
SAMYWSTNDQ LLLVRCKREQ DMHLAGLGHN YGWMRTKEWK WDDIAKRMAK AGRPRDADHC  300
MKKWGNLFQN YKKIQRFKNA SGGANFFRLS NEERKENNFK FRMDRVLYNK IHGGMLGNRT  360
ILTPNVADTG SPDEVQLPRR GAAGGESVGS EAGGDGCPEE RSSTRDSDNN AGSGGASRKR  420
KNARQQALEL IADVMDRHGE LMSSTIDSSS KRQCNILTRQ CDILEQEVVV KKTHYMASDE  480
TQRMMCHALM EIVAAIRDDD GDDDDDDGDD GGDDDDDDDD DDDDGDHDDH DDDANSDDDD  540
DGDDVDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDGHRENDG EDNRHDHEND  600
DDDDDAAVDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-07	Trihelix family protein