PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78378.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB_related

Protein Properties

Length: 2073aa MW: 214965 Da PI: 7.7431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.8e-07	150	191	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E+e + +a ++ G++ +++I ++++ + q++++++ GBG78378.1 150 AWTHAEEESFFHALRRCGKN-FEKITNRVP-SKNKDQVRHYYYR 191 6***************99.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 2073 aa Download sequence
MHGACPLVVL ELVKLKSIFG CSMRINILFD QEFLECGYWP AADAAAAAAT APAASSAADG 60 ADAAPAAPVA AAAAYTMAGA ACDQEEFLGK DKCSEYKQAE MADEEEAVAG EMLRELADQI 120 AESPPAGSSI EDTAAPATRD EKKNTRHWAA WTHAEEESFF HALRRCGKNF EKITNRVPSK 180 NKDQVRHYYY RVIKRMNKLL GPGLVLDARN PHDVNAAMLR WWALMEKQGC SAAKLRHKPK 240 RRKMFVTALE QQLLADRRKA KRKQASGTQA SAVQASAAPA TASPVSAAPA PAAVATGIQD 300 APVCELPSTT GASLSSPACV NDACVPCPSA TGVVSAASGS RGSPGSGRDN MPVAAGPGGE 360 GKGGAGEEQK EGHEAKRGGG EEGTGGGDGK GSGFAEGKGT GEKRGGGVGE GKGGGGEVKT 420 SGGEKKGAAS GEGKGSIDRK AGGLGDSKGV VERKGGLSGE GKAGGGRKVG GLGSKKEGAS 480 PKNSGHKSKK GAAVVIGNIC NVSEVSGAKS TTKVARNAPR QPARRPRPKK DHIEIMTGSQ 540 EPSSINMWEN VMCGVRLVAE AAAQLEQQAM VDQVSELDEE RRISGQMESV HHKPVTQTAL 600 LNQKGGTINQ TSDHLLQEGV HTLQDGVSRS EHEDGIGTSH AVIASSSMGS EELGLLQQPG 660 NRPSSAATIR ELPLCECDNA ASGRVDITKD SAANGLGSAN ADLGAEKVKL QLYPIDDITR 720 RSLAKEGYNP YLELTLKGRK SISAVVSHLL RKWVRKGNDA VATRIDIRRA SPPTAESTGR 780 IIVSSWQDGE LRLFPYGVSP STLQSAKFSW GKEHGSVTAS DVGKVVGSLK PQTFRLRYAW 840 VSYLSDVQVS GQSSAPAERL GSVSEDIQAN AAMKPPGAQP AELSTQMTAM QRQPVTQKQS 900 GQHITILQLS ALSTIQTTRE GFQGASIPTS PRGMDGINVS APKESCPHCG CSGCSKDESQ 960 AVTGINLAPE ERHNNSTGSA VQATAKEVDS TNTTSVPSRR EAPVMLGRAS EQTELEQTGG 1020 LVHGGKVEGS DGEKVTGCQE IGTAKDKAAC RDAQAIGDAA NGRLTFGKST EASRMAIDQA 1080 MRPKFSAKRF CSAGQAEENQ ILKMSTGVQE ASHVAATTPA ATIEEMPAAR CAWAYEQSND 1140 GFGRRSWDVA ENLGNRGYMV EGGLSSLGLD SALSLPSLDT TQTTPSPSCQ PKGVLGASST 1200 SATACTASSG AVPSAHVGTV ERGCFVVPSS IGNSALGKTP PSDADPGLQG SVHSENIPGN 1260 SMSWIDSLSD MSLGDLLTDT LCGNGPGSVE GPSGNSLVVT PTGMATAALS VADLHSPHYI 1320 QHDRKFAYSR QISQISGPLP QRRLFAGGVM TGNTECDRSK GSRGSDPLPS SGKQSLAEEG 1380 IPRQSKEKSS NASLPSLLRE EGTCYGLGFD TPAGSAVAVE PIAYGTCDGG LDFSTPARPA 1440 VPSSSQSVSN RGELAADGVL TEGHNSGDVT AKTNHSVPSV RAEGAPETIE AGAGKQFDSG 1500 ENWSSSKQSE KRQLAAGAQA GAGLELHSNV LPGDSLVIGE DVGFPSTGSL GNELLFGSDF 1560 SLDGSSGLSL LRNIIGTTST GMETPTHPLC PLPTPVSQPF PMTSLTSPGV NMLSSGKSSA 1620 VAAVSVAMGA QGMHRAGTSM SAGDHDVTPK DTGKCTLSSG AICPQQKRTA ATEKDVHTDS 1680 EGLVSMGGGF SEHPPEIAAH IGIKSIDNNN NNNNHNSARE ERSNVSKVRI SHEVIGRNKS 1740 TSTSGPCFPN DSNLQDRSAI GAVTAHKLPS VRDVGVGMTP DHPGVALESE QRVRHEEEPN 1800 QPPPNKSGHQ DGQIIGRRTA AGLSEDGALN PTKGEASKLG QTGKVGLRVS GTESPSKCKM 1860 KDVKVIAGRA KQPPVKADPN VWVPERPFQS LFASLPTNKQ KDEMEFEKGS CRTKSRVATA 1920 DKGGKERGVK AVPSNKGEAS RGGGSSAPKT SKAGPKLESK RVNKKEMSKS SDAVKLKGAS 1980 PEKMGCTGWG EGVKRQRTGM QTMRKIPAGT KDGSTVNDHV DGEDGEAKEA ASAVGCGATS 2040 AGKCQFPTAL IEPPRVGCNP PLWSCSIPAP ASP

Sequence ? help Back to Top

Protein Sequence Length: 2073 aa Download sequence

MHGACPLVVL ELVKLKSIFG CSMRINILFD QEFLECGYWP AADAAAAAAT APAASSAADG  60
ADAAPAAPVA AAAAYTMAGA ACDQEEFLGK DKCSEYKQAE MADEEEAVAG EMLRELADQI  120
AESPPAGSSI EDTAAPATRD EKKNTRHWAA WTHAEEESFF HALRRCGKNF EKITNRVPSK  180
NKDQVRHYYY RVIKRMNKLL GPGLVLDARN PHDVNAAMLR WWALMEKQGC SAAKLRHKPK  240
RRKMFVTALE QQLLADRRKA KRKQASGTQA SAVQASAAPA TASPVSAAPA PAAVATGIQD  300
APVCELPSTT GASLSSPACV NDACVPCPSA TGVVSAASGS RGSPGSGRDN MPVAAGPGGE  360
GKGGAGEEQK EGHEAKRGGG EEGTGGGDGK GSGFAEGKGT GEKRGGGVGE GKGGGGEVKT  420
SGGEKKGAAS GEGKGSIDRK AGGLGDSKGV VERKGGLSGE GKAGGGRKVG GLGSKKEGAS  480
PKNSGHKSKK GAAVVIGNIC NVSEVSGAKS TTKVARNAPR QPARRPRPKK DHIEIMTGSQ  540
EPSSINMWEN VMCGVRLVAE AAAQLEQQAM VDQVSELDEE RRISGQMESV HHKPVTQTAL  600
LNQKGGTINQ TSDHLLQEGV HTLQDGVSRS EHEDGIGTSH AVIASSSMGS EELGLLQQPG  660
NRPSSAATIR ELPLCECDNA ASGRVDITKD SAANGLGSAN ADLGAEKVKL QLYPIDDITR  720
RSLAKEGYNP YLELTLKGRK SISAVVSHLL RKWVRKGNDA VATRIDIRRA SPPTAESTGR  780
IIVSSWQDGE LRLFPYGVSP STLQSAKFSW GKEHGSVTAS DVGKVVGSLK PQTFRLRYAW  840
VSYLSDVQVS GQSSAPAERL GSVSEDIQAN AAMKPPGAQP AELSTQMTAM QRQPVTQKQS  900
GQHITILQLS ALSTIQTTRE GFQGASIPTS PRGMDGINVS APKESCPHCG CSGCSKDESQ  960
AVTGINLAPE ERHNNSTGSA VQATAKEVDS TNTTSVPSRR EAPVMLGRAS EQTELEQTGG  1020
LVHGGKVEGS DGEKVTGCQE IGTAKDKAAC RDAQAIGDAA NGRLTFGKST EASRMAIDQA  1080
MRPKFSAKRF CSAGQAEENQ ILKMSTGVQE ASHVAATTPA ATIEEMPAAR CAWAYEQSND  1140
GFGRRSWDVA ENLGNRGYMV EGGLSSLGLD SALSLPSLDT TQTTPSPSCQ PKGVLGASST  1200
SATACTASSG AVPSAHVGTV ERGCFVVPSS IGNSALGKTP PSDADPGLQG SVHSENIPGN  1260
SMSWIDSLSD MSLGDLLTDT LCGNGPGSVE GPSGNSLVVT PTGMATAALS VADLHSPHYI  1320
QHDRKFAYSR QISQISGPLP QRRLFAGGVM TGNTECDRSK GSRGSDPLPS SGKQSLAEEG  1380
IPRQSKEKSS NASLPSLLRE EGTCYGLGFD TPAGSAVAVE PIAYGTCDGG LDFSTPARPA  1440
VPSSSQSVSN RGELAADGVL TEGHNSGDVT AKTNHSVPSV RAEGAPETIE AGAGKQFDSG  1500
ENWSSSKQSE KRQLAAGAQA GAGLELHSNV LPGDSLVIGE DVGFPSTGSL GNELLFGSDF  1560
SLDGSSGLSL LRNIIGTTST GMETPTHPLC PLPTPVSQPF PMTSLTSPGV NMLSSGKSSA  1620
VAAVSVAMGA QGMHRAGTSM SAGDHDVTPK DTGKCTLSSG AICPQQKRTA ATEKDVHTDS  1680
EGLVSMGGGF SEHPPEIAAH IGIKSIDNNN NNNNHNSARE ERSNVSKVRI SHEVIGRNKS  1740
TSTSGPCFPN DSNLQDRSAI GAVTAHKLPS VRDVGVGMTP DHPGVALESE QRVRHEEEPN  1800
QPPPNKSGHQ DGQIIGRRTA AGLSEDGALN PTKGEASKLG QTGKVGLRVS GTESPSKCKM  1860
KDVKVIAGRA KQPPVKADPN VWVPERPFQS LFASLPTNKQ KDEMEFEKGS CRTKSRVATA  1920
DKGGKERGVK AVPSNKGEAS RGGGSSAPKT SKAGPKLESK RVNKKEMSKS SDAVKLKGAS  1980
PEKMGCTGWG EGVKRQRTGM QTMRKIPAGT KDGSTVNDHV DGEDGEAKEA ASAVGCGATS  2040
AGKCQFPTAL IEPPRVGCNP PLWSCSIPAP ASP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	263	KRRKMFVTALEQQLLADRRKAKRK
2	257	263	RRKAKRK
3	257	264	RRKAKRKQ
4	524	531	RRPRPKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	4e-55	MYB_related family protein