PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78468.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 968aa MW: 106059 Da PI: 8.1201

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.1	7.3e-11	93	169	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ + +l r k k +W++v k++++ g+ +r+++ C +kw+nl +++k + + ++k GBG78468.1 93 WTVDHMIALIRAKRDQDLHLAglghnngRMKTKTWKWDDVEKRLMQMGVtSRKAEDCMKKWDNLYQQFKTVHKFMGK 169 ************766666544433336789999*********9899****************9987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MSTITRGVAN IDVRADDVFG DCDGAGGEDC AAGDESNDND EDGYGEMEIR PIGRKRGGSR 60 ATNKSTQPRA GRRGKKGAGD TSIGEVAKSR DFWTVDHMIA LIRAKRDQDL HLAGLGHNNG 120 RMKTKTWKWD DVEKRLMQMG VTSRKAEDCM KKWDNLYQQF KTVHKFMGKS GKPNFFTLTP 180 GERKERGFDF QMDDRVYSEM KAMSRGNHTI HPTNLVDTGV AGGVQMPCPR GGRNESGGSE 240 GCEDGQDDDQ GSTRDSTFNG VGGGGGDKRK NVRQQTFDTI ADVMKDHENL MATTVDIASK 300 RQCSILTRQS DILERELEVQ KEHYVKADHA NFMMGGLLWT ARRVHGVLRE HGMYKRRVRA 360 ALRTTVIHFP RLQRHCLCTE SSLQACTSTS PLHASAFDSA GSAPSCASST CASSNVAIIV 420 TAPWPVPLPA HHPRASSATC PSSTSTRPPS TWSFIDVLLH PRGCRSRFAD EMAPRNASGK 480 GRKDSGVGDG GETQKGRGHV PKSKRQRVDQ ASSEHNDDFQ AEEVVMVDPQ GTAGAMRLGF 540 GRDGVSREQL SAIKQSLVVG GAGTLPRTPK AAGVLITEAR VLRQLPVVGG QGHPRQPLPL 600 QQAGASGGGK APSVQKGDAT ASDTHTAAVD HSSRSVVAEG AEEARVDDVR RDDGRRDGKR 660 EGDDDDDRPL VTRLKGAAKE DDVEERSKLW VDCNAFWGQG PRKPLREAIE DPAQRKPALR 720 RARNVEKLVL RTIHGWIFKS SSRSTGFARA ESYISVDLVT DVARAVWQGY EWSKVVSPAM 780 VYHTLAMKMD VPLWFAGVKI VDRPEDDDMA ARQETTVLRV ADCWTNAVWC GQWADDGCVK 840 QERLSRLADC LRALLSACMW IMRMGGDNDQ SNYEAWFYVS MVAKPTMIAA GSYIFDWRRN 900 IVDTANLVLD RIGKAHLTLG DYPHCIPKWS DCGLVLRHNA TPKNAAEAAK HGWIGSGPPT 960 EDDADDGS

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MSTITRGVAN IDVRADDVFG DCDGAGGEDC AAGDESNDND EDGYGEMEIR PIGRKRGGSR  60
ATNKSTQPRA GRRGKKGAGD TSIGEVAKSR DFWTVDHMIA LIRAKRDQDL HLAGLGHNNG  120
RMKTKTWKWD DVEKRLMQMG VTSRKAEDCM KKWDNLYQQF KTVHKFMGKS GKPNFFTLTP  180
GERKERGFDF QMDDRVYSEM KAMSRGNHTI HPTNLVDTGV AGGVQMPCPR GGRNESGGSE  240
GCEDGQDDDQ GSTRDSTFNG VGGGGGDKRK NVRQQTFDTI ADVMKDHENL MATTVDIASK  300
RQCSILTRQS DILERELEVQ KEHYVKADHA NFMMGGLLWT ARRVHGVLRE HGMYKRRVRA  360
ALRTTVIHFP RLQRHCLCTE SSLQACTSTS PLHASAFDSA GSAPSCASST CASSNVAIIV  420
TAPWPVPLPA HHPRASSATC PSSTSTRPPS TWSFIDVLLH PRGCRSRFAD EMAPRNASGK  480
GRKDSGVGDG GETQKGRGHV PKSKRQRVDQ ASSEHNDDFQ AEEVVMVDPQ GTAGAMRLGF  540
GRDGVSREQL SAIKQSLVVG GAGTLPRTPK AAGVLITEAR VLRQLPVVGG QGHPRQPLPL  600
QQAGASGGGK APSVQKGDAT ASDTHTAAVD HSSRSVVAEG AEEARVDDVR RDDGRRDGKR  660
EGDDDDDRPL VTRLKGAAKE DDVEERSKLW VDCNAFWGQG PRKPLREAIE DPAQRKPALR  720
RARNVEKLVL RTIHGWIFKS SSRSTGFARA ESYISVDLVT DVARAVWQGY EWSKVVSPAM  780
VYHTLAMKMD VPLWFAGVKI VDRPEDDDMA ARQETTVLRV ADCWTNAVWC GQWADDGCVK  840
QERLSRLADC LRALLSACMW IMRMGGDNDQ SNYEAWFYVS MVAKPTMIAA GSYIFDWRRN  900
IVDTANLVLD RIGKAHLTLG DYPHCIPKWS DCGLVLRHNA TPKNAAEAAK HGWIGSGPPT  960
EDDADDGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	502	507	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-06	Trihelix family protein