PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79066.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 660aa MW: 71558.6 Da PI: 6.957

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.1	7.3e-11	81	157	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ +++l r k k +W++v k++ + g+ +r+++ C +kw+nl +++k + + +++ GBG79066.1 81 WTVEHMIALIRAKRDQDSHLAdlahttgRMKTKTWKWDDVEKRLVHMGVkSRKAVDCGKKWDNLYQQFKTVHKFMGE 157 ************777777733322225689999**********789***************99887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MGADDTLRDE DGGVAEDCEA DDGAGNDDEE DDEDMEIHPL GRKRGGSTAA KKLPETRAGR 60 RRKKGVEDAS AGEGSKSRDF WTVEHMIALI RAKRDQDSHL ADLAHTTGRM KTKTWKWDDV 120 EKRLVHMGVK SRKAVDCGKK WDNLYQQFKT VHKFMGESGK PNFFTLTHGE RKERGFDFRM 180 DERVYSEMAA MTRSDHTIHP TNLADTSATR GVQMPGPREG RNESGGGEGG GDGQDDDQGS 240 TKDSISGGGV GGGSKRKNVR QQTFDTIADV MKEHKSVMAS TVDSARKRQC SILTRQCDIL 300 EREVEVQKEH YFKSDQANLM MCEALMEIAK AIRMPSRGAS ARGRKDGGVG NGGETNKGRG 360 HILKSKRQRI DDASSSQTED FLADEVAMVD AQGTTGVVRL GFGRDGVSRE QLQAGRRSVV 420 GGAAGTVPRS PNTTGVVVTA ARVAGQISAA AGQGQPRQPL PLQHVLATGG GHMATMQKGD 480 ATATASRTAA ADHTTKGRVV EGAERVGVDD VGRDDGRRDG KPEANDGDDR PLVPRGKGAP 540 KEDELQEKAK LWVDCDAFWG QGPGKPLREA VGECTDYFVA VANGDAGAEP PSMLIMPPND 600 VPRFKIDDPA QREPALRRAS SVERVVLRTI HGWIFKSQSR WTGFCRAESY ITVDFATDLA

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MGADDTLRDE DGGVAEDCEA DDGAGNDDEE DDEDMEIHPL GRKRGGSTAA KKLPETRAGR  60
RRKKGVEDAS AGEGSKSRDF WTVEHMIALI RAKRDQDSHL ADLAHTTGRM KTKTWKWDDV  120
EKRLVHMGVK SRKAVDCGKK WDNLYQQFKT VHKFMGESGK PNFFTLTHGE RKERGFDFRM  180
DERVYSEMAA MTRSDHTIHP TNLADTSATR GVQMPGPREG RNESGGGEGG GDGQDDDQGS  240
TKDSISGGGV GGGSKRKNVR QQTFDTIADV MKEHKSVMAS TVDSARKRQC SILTRQCDIL  300
EREVEVQKEH YFKSDQANLM MCEALMEIAK AIRMPSRGAS ARGRKDGGVG NGGETNKGRG  360
HILKSKRQRI DDASSSQTED FLADEVAMVD AQGTTGVVRL GFGRDGVSRE QLQAGRRSVV  420
GGAAGTVPRS PNTTGVVVTA ARVAGQISAA AGQGQPRQPL PLQHVLATGG GHMATMQKGD  480
ATATASRTAA ADHTTKGRVV EGAERVGVDD VGRDDGRRDG KPEANDGDDR PLVPRGKGAP  540
KEDELQEKAK LWVDCDAFWG QGPGKPLREA VGECTDYFVA VANGDAGAEP PSMLIMPPND  600
VPRFKIDDPA QREPALRRAS SVERVVLRTI HGWIFKSQSR WTGFCRAESY ITVDFATDLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	64	RKRGGSTAAKKLPETRAGRRRKK
2	364	369	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein