PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79081.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 936aa MW: 102262 Da PI: 4.4145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.9	1.9e-11	319	393	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + l+L++ +r ++++++r + k+ +We+++k+m+ g r + +C +kw+nl + ykk+++ ++ GBG79081.1 319 WSLDDQLLLVRCKReqdmhlaGLGHNYGRVRTKEWKWEDIAKRMANAGSPRDADECMKKWDNLFQNYKKVQRFQN 393 7888888888888833333333444555778**************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence
MQAGAPQVAG QGGSLPSTAA PRRQYDPSSY SHLQSWETPL PPSDEEVEAE ELGMLPLASG 60 STQLLFSQTL IAGGSASKEG GEFTSLLEAG LDHDDDEKVD LRFGLSSGSA REASRTFIIE 120 EQPSPRYLQR PRRGHTEQST LRGGASLTAC VRPSSTARHR GPSAPSIDPL PKTLPTRSGV 180 AAAAARISEV AAAPARNSFG RSNMSNPTPR PEDEFRGDPA CRPVVRPQPT VENITEGVSN 240 MRAHNDGVDE NGGAGDDADD GFREDVEAVD DDGDAPIRPL GKAGGRGRGR GRGGGRGRSA 300 GRGSRVADDD DGEKSATYWS LDDQLLLVRC KREQDMHLAG LGHNYGRVRT KEWKWEDIAK 360 RMANAGSPRD ADECMKKWDN LFQNYKKVQR FQNASGEADF FRLSNEERKD HNFMFRMERA 420 LYNEIHGGML GNHTISLPTS QTQGGASSRF SFRSGRMAPR RGSGGQARGK KRDEITEETA 480 GVSGGGRHMT KTKRSRQDAG SVSGWHLDGD DWGRPNDGEG HNEPGYLAME EVARMEQDQI 540 TPVTTPRGRN REDAGTGTSV ATTHVQQAVG ERGSGGAATP RVQRALGERG SSSAGDAAML 600 GDQAQVRGAA AVVGEAAGTP CETGGGGRKA EEAARTLEIP RAKKRKAMED NKPLVNTVRK 660 GEVVKELADR AKLWVDDKSF WRSGEGCRLY NIVNNARKYL VAIARGVPLP KVPKSVALPR 720 SKVTMTRLID SAQLQGAMNR ASKCQNVVMR VLHGWVFKSG SRERGYTLAF QYLLESVATD 780 FVRAMWLGED RSNVISPAIY AHTLELRMDL PLWYSEDADG DDDDDVDDDD DDDDDDDHHN 840 DDDDDDDDDD GDDDDDDDDH DDDDRDDDND DDCDDDDDDD DDDDDDDDDD NDDHDNDDDD 900 DDDDNDEDED DNRSEVARAR YFFLCVFGQV GRCSTL

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence

MQAGAPQVAG QGGSLPSTAA PRRQYDPSSY SHLQSWETPL PPSDEEVEAE ELGMLPLASG  60
STQLLFSQTL IAGGSASKEG GEFTSLLEAG LDHDDDEKVD LRFGLSSGSA REASRTFIIE  120
EQPSPRYLQR PRRGHTEQST LRGGASLTAC VRPSSTARHR GPSAPSIDPL PKTLPTRSGV  180
AAAAARISEV AAAPARNSFG RSNMSNPTPR PEDEFRGDPA CRPVVRPQPT VENITEGVSN  240
MRAHNDGVDE NGGAGDDADD GFREDVEAVD DDGDAPIRPL GKAGGRGRGR GRGGGRGRSA  300
GRGSRVADDD DGEKSATYWS LDDQLLLVRC KREQDMHLAG LGHNYGRVRT KEWKWEDIAK  360
RMANAGSPRD ADECMKKWDN LFQNYKKVQR FQNASGEADF FRLSNEERKD HNFMFRMERA  420
LYNEIHGGML GNHTISLPTS QTQGGASSRF SFRSGRMAPR RGSGGQARGK KRDEITEETA  480
GVSGGGRHMT KTKRSRQDAG SVSGWHLDGD DWGRPNDGEG HNEPGYLAME EVARMEQDQI  540
TPVTTPRGRN REDAGTGTSV ATTHVQQAVG ERGSGGAATP RVQRALGERG SSSAGDAAML  600
GDQAQVRGAA AVVGEAAGTP CETGGGGRKA EEAARTLEIP RAKKRKAMED NKPLVNTVRK  660
GEVVKELADR AKLWVDDKSF WRSGEGCRLY NIVNNARKYL VAIARGVPLP KVPKSVALPR  720
SKVTMTRLID SAQLQGAMNR ASKCQNVVMR VLHGWVFKSG SRERGYTLAF QYLLESVATD  780
FVRAMWLGED RSNVISPAIY AHTLELRMDL PLWYSEDADG DDDDDVDDDD DDDDDDDHHN  840
DDDDDDDDDD GDDDDDDDDH DDDDRDDDND DDCDDDDDDD DDDDDDDDDD NDDHDNDDDD  900
DDDDNDEDED DNRSEVARAR YFFLCVFGQV GRCSTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	297	RGRGRGGGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein