PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79334.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1395aa MW: 152374 Da PI: 7.492

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30	1.3e-09	586	662	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ +++l r k k +W++v k++ + g+ +r+ + C +kw+nl +++k + + +++ GBG79334.1 586 WTVEHMIALIRAKRDQDSHLAglahttgRMKTKTWKWDDVEKRLVQMGVrSRKVVDCGKKWDNLYQQFKTVHKFMGE 662 ************888888855554335689999**********889***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1395 aa Download sequence
MEEEPPFAIP LWETVGRGTA AGRALFAIYG GDLGGRKAGN RFSDHNLQML RKSGRSWRPT 60 RLWGRAETAD PTRVKRPEVK VPRYGRHTEP PLSAIEKLKG RKTAKAIQED LEREFEREGL 120 PVPPHPKGAV LDDKEKYRFQ RLLEWEGRPP EEDEELIESF FRKADLKTSA KDQCTEMQNL 180 FHSLMTEVEE REEFLAYMRR LGRGHVYEGK ITAEIDEVMK MVSTIASGEH RTSSAGSCSG 240 RDVPACSTTV EKYVFCKRPL AASCEIASIS FVGVFPLTPF VSVRRACHSA SASFVSAALS 300 FMADLYRRLP LLLLAVVLLL AVALLLAVVI FHICCLVRVP GRKQTWRTSK TARKMERVQT 360 RTTLSVGAAG SSRRRCRSAE AVRRPYDSAL YSHLPSHEIP LPPSDDDGDD PRCSTLPLGS 420 GSTQDWMGSQ LHRQASTPTY TDLLEGRTPA GYGPGLVDLS FGLRSGSAEE VTRTVIVNPA 480 SGTTHTPAPV TTRTGGSVPG VAKTTVGADD ILGDEDGAVA EDCEADDGAG NDDEEDDEEM 540 EIHPVGRKRG GSRAAKKLPE MRTGRRGKKG VEDASAGEGS KSRDSWTVEH MIALIRAKRD 600 QDSHLAGLAH TTGRMKTKTW KWDDVEKRLV QMGVRSRKVV DCGKKWDNLY QQFKTVHKFM 660 GESGKPNFFT LTPGERKEQG FDFRMHERVY SEMAAMTRSD HTIHPTNLAD TGVIGGVQMP 720 GPRGGRNESG GSEGGGDGQD HDQGSTRDSI SGGGVGGGSK RKNVRQHTFD TIADVMKEHG 780 SLMAITVDRA SKRQCSILTR QCDILEREVE VQKEHYVKAD QANSMMCQAL MEIAKAIRER 840 SRRLPATHVV VVLRAALTRC TGCMPPRGAS ARGRKDGGVG DGGETNKGRG HILKSKRQLI 900 DDGSSSQTDD FLADEVAMVD AQGMAGVARL GFGRDGVSRE QLQAVKCSVV GGAAGTVPRT 960 PNTTGVVVTG ARVEGQLSAA AGQGQPRQPL PLQHVLASGG GHTAIAQKGD TTASASRTAA 1020 ADHTAKAGVV EGAERGGVDD VGRDDGRRDG KREGNDGDDR PLVPRGKGAP KEDELEEKAK 1080 LWVDCDAFWG QGPEKPLREA VGECTDYFVA IANGDAGAEP PSMLIMPPND VPRFKIDDPA 1140 QRDPALRRAH RVERVVLRTI HGWIFKWQSR STGFSRAESY ITVDFATDLA RAVWQALEWS 1200 RVVSPALVYH TLAMKMDVPL WFTGVKIEDR PEDDDMAARQ EVTVLLLAEC WTDALWCGQW 1260 ADGGRVKQER LSRLADSLRA LLCVVMWIMR MGGDDDRSHY EAWSYASMVA KPTMIAAGSY 1320 IFNWRRHVVD SANLVLDRLG KAHLTLGDYP QCIPEWCDCG LAFGHNAALK NAVEAAKHGW 1380 IGSGPAADDD GDDGK

Sequence ? help Back to Top

Protein Sequence Length: 1395 aa Download sequence

MEEEPPFAIP LWETVGRGTA AGRALFAIYG GDLGGRKAGN RFSDHNLQML RKSGRSWRPT  60
RLWGRAETAD PTRVKRPEVK VPRYGRHTEP PLSAIEKLKG RKTAKAIQED LEREFEREGL  120
PVPPHPKGAV LDDKEKYRFQ RLLEWEGRPP EEDEELIESF FRKADLKTSA KDQCTEMQNL  180
FHSLMTEVEE REEFLAYMRR LGRGHVYEGK ITAEIDEVMK MVSTIASGEH RTSSAGSCSG  240
RDVPACSTTV EKYVFCKRPL AASCEIASIS FVGVFPLTPF VSVRRACHSA SASFVSAALS  300
FMADLYRRLP LLLLAVVLLL AVALLLAVVI FHICCLVRVP GRKQTWRTSK TARKMERVQT  360
RTTLSVGAAG SSRRRCRSAE AVRRPYDSAL YSHLPSHEIP LPPSDDDGDD PRCSTLPLGS  420
GSTQDWMGSQ LHRQASTPTY TDLLEGRTPA GYGPGLVDLS FGLRSGSAEE VTRTVIVNPA  480
SGTTHTPAPV TTRTGGSVPG VAKTTVGADD ILGDEDGAVA EDCEADDGAG NDDEEDDEEM  540
EIHPVGRKRG GSRAAKKLPE MRTGRRGKKG VEDASAGEGS KSRDSWTVEH MIALIRAKRD  600
QDSHLAGLAH TTGRMKTKTW KWDDVEKRLV QMGVRSRKVV DCGKKWDNLY QQFKTVHKFM  660
GESGKPNFFT LTPGERKEQG FDFRMHERVY SEMAAMTRSD HTIHPTNLAD TGVIGGVQMP  720
GPRGGRNESG GSEGGGDGQD HDQGSTRDSI SGGGVGGGSK RKNVRQHTFD TIADVMKEHG  780
SLMAITVDRA SKRQCSILTR QCDILEREVE VQKEHYVKAD QANSMMCQAL MEIAKAIRER  840
SRRLPATHVV VVLRAALTRC TGCMPPRGAS ARGRKDGGVG DGGETNKGRG HILKSKRQLI  900
DDGSSSQTDD FLADEVAMVD AQGMAGVARL GFGRDGVSRE QLQAVKCSVV GGAAGTVPRT  960
PNTTGVVVTG ARVEGQLSAA AGQGQPRQPL PLQHVLASGG GHTAIAQKGD TTASASRTAA  1020
ADHTAKAGVV EGAERGGVDD VGRDDGRRDG KREGNDGDDR PLVPRGKGAP KEDELEEKAK  1080
LWVDCDAFWG QGPEKPLREA VGECTDYFVA IANGDAGAEP PSMLIMPPND VPRFKIDDPA  1140
QRDPALRRAH RVERVVLRTI HGWIFKWQSR STGFSRAESY ITVDFATDLA RAVWQALEWS  1200
RVVSPALVYH TLAMKMDVPL WFTGVKIEDR PEDDDMAARQ EVTVLLLAEC WTDALWCGQW  1260
ADGGRVKQER LSRLADSLRA LLCVVMWIMR MGGDDDRSHY EAWSYASMVA KPTMIAAGSY  1320
IFNWRRHVVD SANLVLDRLG KAHLTLGDYP QCIPEWCDCG LAFGHNAALK NAVEAAKHGW  1380
IGSGPAADDD GDDGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein