PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79716.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 635aa MW: 68595.9 Da PI: 5.2267

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.3	4e-13	321	405	1	80
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rW + e+ L++ + e+++++++++ lk+ lW++vs++m+e +++r+ + Ck+++ +++ y+ ik++++ s++++ ++ GBG79716.1 321 RWGEMETTMLLRRVYEVKTNIGENSeamgiapLKQRLWRDVSERMKEAQYNREDEDCKNRFHYVRNNYRLIKDHNRW--SDNQKYWS 405 8*********99999999998755677777*****************************************98..45665665 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MAGSSDRSGL QCISDWGFTP DSEVQESDGM QIPSLQVDLA FGGRRITADD GDEDQLRERL 60 RLRAMDMAGE QGFYSPLTSS QHPSPPRFTF APNYSYRCAD LPDTLEAQRT VVDCPLTPLH 120 STSSAPAATG SPSVACHSTP ASVRKGVTGI SPSLQQETGK PSTSPCVRNL QYGSPDIDVR 180 CQPEPAGEAS LHNRTFLQCL IHAVEDGDFD SQEIFVQGLD QQHGNSGSTP PAVRGMPDEG 240 GMPCGVDIRH VDETSTRHDA LCSKLGNASG GSTSISVGKA VAKAAAPAVA EAAAPAVAEA 300 VAPAAASGSV DGGKKKKVSN RWGEMETTML LRRVYEVKTN IGENSEAMGI APLKQRLWRD 360 VSERMKEAQY NREDEDCKNR FHYVRNNYRL IKDHNRWSDN QKYWSMDQAT RKANSLDFMM 420 RRDWYDIINV HEVDKDTINP NSLTGPGAGE HNVDNVHDSD VEVGDDDAEE EEAVEDGWAI 480 GGGSHTGGSG GGAEPPLYDC AGGGGGTSVP GQAGASTSAS GGSTSSATVT ETLGRRKRCQ 540 QNARELAMRA VTGAMRDHTS AQXRSDITHH QILREQLTIQ DRAAKLTCEV MREDIASLPC 600 QIPLITSLLD GNDSILQLRL QIMMLLKFMN FKKKR

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MAGSSDRSGL QCISDWGFTP DSEVQESDGM QIPSLQVDLA FGGRRITADD GDEDQLRERL  60
RLRAMDMAGE QGFYSPLTSS QHPSPPRFTF APNYSYRCAD LPDTLEAQRT VVDCPLTPLH  120
STSSAPAATG SPSVACHSTP ASVRKGVTGI SPSLQQETGK PSTSPCVRNL QYGSPDIDVR  180
CQPEPAGEAS LHNRTFLQCL IHAVEDGDFD SQEIFVQGLD QQHGNSGSTP PAVRGMPDEG  240
GMPCGVDIRH VDETSTRHDA LCSKLGNASG GSTSISVGKA VAKAAAPAVA EAAAPAVAEA  300
VAPAAASGSV DGGKKKKVSN RWGEMETTML LRRVYEVKTN IGENSEAMGI APLKQRLWRD  360
VSERMKEAQY NREDEDCKNR FHYVRNNYRL IKDHNRWSDN QKYWSMDQAT RKANSLDFMM  420
RRDWYDIINV HEVDKDTINP NSLTGPGAGE HNVDNVHDSD VEVGDDDAEE EEAVEDGWAI  480
GGGSHTGGSG GGAEPPLYDC AGGGGGTSVP GQAGASTSAS GGSTSSATVT ETLGRRKRCQ  540
QNARELAMRA VTGAMRDHTS AQXRSDITHH QILREQLTIQ DRAAKLTCEV MREDIASLPC  600
QIPLITSLLD GNDSILQLRL QIMMLLKFMN FKKKR