PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG80187.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 756aa MW: 82765.6 Da PI: 6.5148

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG80187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.5e-12	101	176	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aLi+a+r+ + +l+ r kl++ +W +v +++++ g+er++++C +kw+nl +++kk+ + ++ GBG80187.1 101 WSVDDMVALIRAKRDQDAHLQgmgtayaRMKLREWKWLDVEQRLKKVGVEREAERCGKKWDNLMQQFKKVHHFQGL 176 999999******87777774443333668************************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MLHPRRQESI TRGVQRLRVV DDENDGDAPD VGGNDQDLND DDCGGGEDDA GQVWPSKQSS 60 MVGKGGRAKA SIRNGRRGKK PTGKGSDVEA DGDAEGGRHF WSVDDMVALI RAKRDQDAHL 120 QGMGTAYARM KLREWKWLDV EQRLKKVGVE REAERCGKKW DNLMQQFKKV HHFQGLSGKQ 180 DFFQFTGKER LSKGFSFNMD RAVYDEILGS TAKSHTINPK NVADTGAPGG VRLSSANSGD 240 PESVGDRDAA AGLDDDDGGS TRGSSQTTGG PAGFSKRKST RQQTFDTLSE CMEKQGALVA 300 LTMESNNKRQ CSIQIRQCEA LEAEVEVQKK HYAASDEVSK LMCHALLEIA KAIREHAEGW 360 VAEGDDSHGE SDFAESEEIP MKRKSSRRQT AALRIDDVGE RCSAGGRGAS QQDANVVARP 420 ATGRVGGNAA TQQNRAPLPR VNEPPAAQEV FVRGRTPSTP QQMTATEVGP PAIRRSIVLP 480 HTTIPQHKID DESEFSAAQD RALKVQTIAL HVIHGWVFKS ASRQRGYHAA YRYALNHAAT 540 DIARAIWMGE DWCMCVSPMV FHTTLDMDMK LPLWFIGGHI KDRHEDDELA AYQEASVQRL 600 VGAFTSAVSM AEGVDGGRVS HERLKSVAEA MRVMLAATMW LMRMGGDDRR AHYDAWVFVQ 660 LTAKPTLIAS IHHSFDAHRH IVQAATAITD KLAKPPITLL APPVYIPDWA SIGVKFSHDA 720 TFSSPMEAQK LDWLGTGPPE DDDDAAVNDD MIAGGS

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MLHPRRQESI TRGVQRLRVV DDENDGDAPD VGGNDQDLND DDCGGGEDDA GQVWPSKQSS  60
MVGKGGRAKA SIRNGRRGKK PTGKGSDVEA DGDAEGGRHF WSVDDMVALI RAKRDQDAHL  120
QGMGTAYARM KLREWKWLDV EQRLKKVGVE REAERCGKKW DNLMQQFKKV HHFQGLSGKQ  180
DFFQFTGKER LSKGFSFNMD RAVYDEILGS TAKSHTINPK NVADTGAPGG VRLSSANSGD  240
PESVGDRDAA AGLDDDDGGS TRGSSQTTGG PAGFSKRKST RQQTFDTLSE CMEKQGALVA  300
LTMESNNKRQ CSIQIRQCEA LEAEVEVQKK HYAASDEVSK LMCHALLEIA KAIREHAEGW  360
VAEGDDSHGE SDFAESEEIP MKRKSSRRQT AALRIDDVGE RCSAGGRGAS QQDANVVARP  420
ATGRVGGNAA TQQNRAPLPR VNEPPAAQEV FVRGRTPSTP QQMTATEVGP PAIRRSIVLP  480
HTTIPQHKID DESEFSAAQD RALKVQTIAL HVIHGWVFKS ASRQRGYHAA YRYALNHAAT  540
DIARAIWMGE DWCMCVSPMV FHTTLDMDMK LPLWFIGGHI KDRHEDDELA AYQEASVQRL  600
VGAFTSAVSM AEGVDGGRVS HERLKSVAEA MRVMLAATMW LMRMGGDDRR AHYDAWVFVQ  660
LTAKPTLIAS IHHSFDAHRH IVQAATAITD KLAKPPITLL APPVYIPDWA SIGVKFSHDA  720
TFSSPMEAQK LDWLGTGPPE DDDDAAVNDD MIAGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein