PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG80203.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 735aa MW: 80601.8 Da PI: 7.004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG80203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.4	3.2e-12	42	113	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+ + + +++ r k + +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG80203.1 42 WSVEHIIALIRAKCDQDAHMQgmghayaRMKPWEWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKVHH 113 9***********777777744433325678899********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MAGKGGKSKP SGRNARPRAK KGQGKGSGGE GDGDAEEKRN FWSVEHIIAL IRAKCDQDAH 60 MQGMGHAYAR MKPWEWKWQD VAQRLKNVGV DRNAEKCGKK WDNLMQQFKK VHHFQSPSGG 120 ADFFQLTSKE RMSRGFNFTM DRVVYNEIEG STGMNHTIHP KNVADTGASG GMRTPSTSYV 180 DPESVADGEG GAGREDEEEG STRGSSQTXG TPXGXGKRKS XRQQTFEALT ECMEKHGELM 240 ASTMESASKR QCSIXVRQCE AXEAEVEVQR KHYAASDEVX KLMCHALLEI AKAILFVDVA 300 RDVARDVARR DVGGRAKEGA ASHETPQCVL APLNRPRTPA ADVAGSSQAA VEGGTLQSPA 360 VAARGGAVAV PGEAVEVPKG GDGVAAGEDD EALVHRLRGQ RAATHAMDAA AKLWEDDNRF 420 WNDTQGSAIV RIIQEVRTYL VAVTRGGQPP AIRRSISLPH NSIPQHKIED ESELNAAKER 480 ALKVQTISLR AIHGWVFKSE SRQRGYHLAY QYALKHAATD IARAMWSAED WRSLVSPMLF 540 RATLDVDMKL PLWFVGVNIV DRHEDDECAA YQEACVQRLV QDFTSAVGTT EAMDGGRVSY 600 ERLKGMAEAI RYLLAATMWI MRMAGDDPRS HYDAWVFVQL TAKTTLLASM NRQFDARRHI 660 TQSAQVMTDK LGRLPLTFAP PPAYIPDWAS KCGVTFSHDA TLASPMEAKR LDWLGTGPPE 720 DDDDDAKGDD KGEGG

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MAGKGGKSKP SGRNARPRAK KGQGKGSGGE GDGDAEEKRN FWSVEHIIAL IRAKCDQDAH  60
MQGMGHAYAR MKPWEWKWQD VAQRLKNVGV DRNAEKCGKK WDNLMQQFKK VHHFQSPSGG  120
ADFFQLTSKE RMSRGFNFTM DRVVYNEIEG STGMNHTIHP KNVADTGASG GMRTPSTSYV  180
DPESVADGEG GAGREDEEEG STRGSSQTXG TPXGXGKRKS XRQQTFEALT ECMEKHGELM  240
ASTMESASKR QCSIXVRQCE AXEAEVEVQR KHYAASDEVX KLMCHALLEI AKAILFVDVA  300
RDVARDVARR DVGGRAKEGA ASHETPQCVL APLNRPRTPA ADVAGSSQAA VEGGTLQSPA  360
VAARGGAVAV PGEAVEVPKG GDGVAAGEDD EALVHRLRGQ RAATHAMDAA AKLWEDDNRF  420
WNDTQGSAIV RIIQEVRTYL VAVTRGGQPP AIRRSISLPH NSIPQHKIED ESELNAAKER  480
ALKVQTISLR AIHGWVFKSE SRQRGYHLAY QYALKHAATD IARAMWSAED WRSLVSPMLF  540
RATLDVDMKL PLWFVGVNIV DRHEDDECAA YQEACVQRLV QDFTSAVGTT EAMDGGRVSY  600
ERLKGMAEAI RYLLAATMWI MRMAGDDPRS HYDAWVFVQL TAKTTLLASM NRQFDARRHI  660
TQSAQVMTDK LGRLPLTFAP PPAYIPDWAS KCGVTFSHDA TLASPMEAKR LDWLGTGPPE  720
DDDDDAKGDD KGEGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	23	ARPRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-08	Trihelix family protein