PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG80889.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 510aa MW: 55851 Da PI: 10.0092

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG80889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.8	1e-11	277	352	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aL +a+r+ + +l+ r k ++ +W +v+ ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG80889.1 277 WSVDDIIALTRAKRDQDAHLQgmghayaRMKPREWKWLDVATRLKKVGVDREADRCGKKWDNLMQQFKKVHHFQGL 352 99999*******666666643333326789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MCILGCVSRR GRRRRSFKND ARMEGRQTIS GSAGEHGGRR SGHSPSNSSR PSERSGYAHL 60 PPHLQPMPDT SDEEAGKRIR LGVDGYRAVW KSRGRSPAPL WEASGNNKDP LRQQFRSSSV 120 CRGASAHPHW MQSPSPLSAG SIAGRRLGEC GETARGIADV RDARDGREMW AEQRRLMRSG 180 REESITRGVQ RLRVGKDGHD CEEAVADAHD SDWNDNGAEG GEDDAGYISP SKQAAAMGGR 240 GGKTKSCVDN GRRGKRTAGK GSDAKGDVDG EGGHHFWSVD DIIALTRAKR DQDAHLQGMG 300 HAYARMKPRE WKWLDVATRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFQ 360 LSGKDRMSKG FSFNMDRAVY DEILGSTTKN HTINPKNVAD TGAQGGVRLP SASFADPKSV 420 DDRDGGAEHD DDDSTKGPSQ TTGGAGDFGK KKSTRQQTFE AMTECMEKHG ALMASTMESN 480 NKRHCYIAPP VRRFIHHLGV ALGNAPHPMA

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MCILGCVSRR GRRRRSFKND ARMEGRQTIS GSAGEHGGRR SGHSPSNSSR PSERSGYAHL  60
PPHLQPMPDT SDEEAGKRIR LGVDGYRAVW KSRGRSPAPL WEASGNNKDP LRQQFRSSSV  120
CRGASAHPHW MQSPSPLSAG SIAGRRLGEC GETARGIADV RDARDGREMW AEQRRLMRSG  180
REESITRGVQ RLRVGKDGHD CEEAVADAHD SDWNDNGAEG GEDDAGYISP SKQAAAMGGR  240
GGKTKSCVDN GRRGKRTAGK GSDAKGDVDG EGGHHFWSVD DIIALTRAKR DQDAHLQGMG  300
HAYARMKPRE WKWLDVATRL KKVGVDREAD RCGKKWDNLM QQFKKVHHFQ GLSGKQDFFQ  360
LSGKDRMSKG FSFNMDRAVY DEILGSTTKN HTINPKNVAD TGAQGGVRLP SASFADPKSV  420
DDRDGGAEHD DDDSTKGPSQ TTGGAGDFGK KKSTRQQTFE AMTECMEKHG ALMASTMESN  480
NKRHCYIAPP VRRFIHHLGV ALGNAPHPMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-08	Trihelix family protein