PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG80944.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-YC

Protein Properties

Length: 601aa MW: 65395 Da PI: 5.1898

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG80944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.2	7.4e-18	41	115	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++ad++v +i+ +Pvl+ska elf+ +l r++ + +t+ s ++a+v + ++dfl div + GBG80944.1 41 ARIKKIMQADDEVGKIAQATPVLISKAMELFLQDLCNRTYQITAARGAKTIGISHLKACVMSNGVYDFLRDIVSQ 115 8***********************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MGADVQGQRR VQIQQWGPCY WLDESVPCCD GAFLPCLFLQ ARIKKIMQAD DEVGKIAQAT 60 PVLISKAMEL FLQDLCNRTY QITAARGAKT IGISHLKACV MSNGVYDFLR DIVSQAPDAG 120 AEASMDDKGF AAVRRPCELQ SEDSGSEKED VKRLRTFRFS FSMLAAGETL FFAVSALFGV 180 WFNCTSAFPS HWWVAGDELT ADMILLSDQD SMAGQGRGRG RGRGRHSRSQ PENGQVMVSC 240 DGKSVGFEYR QQTANGRTSP MIDMTASHTP VNMKLRETDG GIAISQTAPR LVPALYVDTT 300 GSGSSYCLSD PFFANEFRED SQKLVGSLPS DRLQGSGLTC GSYSDGFHLP PQRLVGSLPA 360 GRSQSCLSDR FEQEWFKNRS DSTANWFTPS EQAMQLQTSS RMVLSAVPAE RFGGRATPLN 420 RRSTELHGAS LVFDRFGDGG CSGSGEVGTR QGQVISRSVG NSVYMVNANA TAANVTADAN 480 ADSGRLDLSR ANASGASCEL ASSARLKREP KDFDLNMDVD KVGLAGLDSN VVLPQFSGEI 540 WGRSVMGHIQ GLQAHQGESR GGLISSSMKM EGQRDMPVPN YNTGKWDDEE DYDNYDEDEK 600 H

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MGADVQGQRR VQIQQWGPCY WLDESVPCCD GAFLPCLFLQ ARIKKIMQAD DEVGKIAQAT  60
PVLISKAMEL FLQDLCNRTY QITAARGAKT IGISHLKACV MSNGVYDFLR DIVSQAPDAG  120
AEASMDDKGF AAVRRPCELQ SEDSGSEKED VKRLRTFRFS FSMLAAGETL FFAVSALFGV  180
WFNCTSAFPS HWWVAGDELT ADMILLSDQD SMAGQGRGRG RGRGRHSRSQ PENGQVMVSC  240
DGKSVGFEYR QQTANGRTSP MIDMTASHTP VNMKLRETDG GIAISQTAPR LVPALYVDTT  300
GSGSSYCLSD PFFANEFRED SQKLVGSLPS DRLQGSGLTC GSYSDGFHLP PQRLVGSLPA  360
GRSQSCLSDR FEQEWFKNRS DSTANWFTPS EQAMQLQTSS RMVLSAVPAE RFGGRATPLN  420
RRSTELHGAS LVFDRFGDGG CSGSGEVGTR QGQVISRSVG NSVYMVNANA TAANVTADAN  480
ADSGRLDLSR ANASGASCEL ASSARLKREP KDFDLNMDVD KVGLAGLDSN VVLPQFSGEI  540
WGRSVMGHIQ GLQAHQGESR GGLISSSMKM EGQRDMPVPN YNTGKWDDEE DYDNYDEDEK  600
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-35	NF-YC family protein