PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82004.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 2266aa MW: 249291 Da PI: 5.4439

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.3	1.2e-10	1197	1269	2	67
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ ++ aLi+a+r+ + +l+++ ++++ +W +v +++ + g+ r + +C +kw+nl +++kki + GBG82004.1 1197 WSVDHMVALIRAKRDQDAQLQAAghafarmRSREWKWLDVRERLLKVGVDRPADKCGKKWDNLMQQFKKIHTF 1269 99**********9999999753333333699**********************************9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 2266 aa Download sequence
MAAAEEMERK FAANFLEGED YPRDGDLTEL ARARAELAAL QNKFENMGFV SGHVTYMEQI 60 GPKRVILSKT PSISAPMLPP PVRALPPPPV EAPVRSNESV AIFELTKTLI SLIQESKKEQ 120 REHNARLEAM MRNMRPIAVR APPMPQGLAP APALGGVANN MNVCYACHQP RHLARDCPHR 180 PPQQRTGAAP MVAAPIANGS GRVGALMEEV EGGGSALTTS EEAAELIALD QYVSLGYPGL 240 GMIGTIRPAP EPKEVADWRP SLGEMESGGP TFVTGEIDVL NIIRTLDHRI PVPIGHLLSI 300 SEQANERMLQ HCKANPKRFA LARTPNAKAK SPAPEENPAS TPDPIRRAMN MTFQNFVNKT 360 RLTQGMINFC VIVYMDDILV YSETYHGHAQ HIEWTLGALR DAGFKIALEK SEFFLSKISF 420 LGYVVTRGGL RPDSRKVAAV KEAPVPTSLT QVRAFLGLVS YYRRFIKGFA AIARPLTNLL 480 RKDQPLSWDA ECQQAFATLK DALATTPILI RPDPSKQFIL ITDWQPDAIS AILAQKGNNG 540 REHVIEYASR TVPDERRNDS APQGECYAVV WGIQHFHPYL YGHKFRLVMD HEPLLALKKL 600 TNYTGTIGRW AVRLQEYDFD IVHRKTERHG NADRLTRLHR PAKVPKGEEI TPWKEPDLTN 660 EPKYGQVAVL PREEAEEESE GEFRREAGEA AARLAEVEEE ESEAEEGSAE AKEEEEEEAE 720 EETSEEEEEA YNEYSEGKQS EEEDEGDEEV ESGDDQEPTH DKLEWVQGPD RREENLEAAA 780 QRKKEIEEGK WLAIDPAPND PFKDPEPPKP EHGDLAATTS GAATTRHRSR SRSTSPSASG 840 RPPIRQRVCI LGRLPSRIRR KRGVRKSVAM DGQRPNLATL SDTYPSHRPA ICTGVDKRAA 900 GPSTYEGLPP HMQPLPDSDE GEADVDVSNT VPLGSGSTQE WTGSQLFDGR GAKYRQSFTS 960 LLHEGAQEEE RLPPVDLTFG LRSGSPSSAT RTVLMNPHPD DDAGQVTLVG RGTRGGSTRQ 1020 ETSEKTRERP RVQATSGPSI PRTTAGRPEW MNPPPAFSRG RDSVPRPVER GVSAEDFPFE 1080 GARGDGRRVW KESRQVLRRQ QEESITQGVQ RLRVGERAGQ ADAVGGGGDV WTDGDEVECD 1140 AEEDDSGDVF PLRASNMGGR GSRGRASTNA GRRRKRPSAA SGDAEGEGDG EGGRNYWSVD 1200 HMVALIRAKR DQDAQLQAAG HAFARMRSRE WKWLDVRERL LKVGVDRPAD KCGKKWDNLM 1260 QQFKKIHTFM GMSGKEDFFQ LTSQQRAEKG FSFNMDRTVY EEIKGAKERS HTISPSNVAD 1320 TGGAGGVQLP SAQSATPESV GGGDAARDGN DEDDSSARGA SQTTGSPAGF GKRKNVRQQT 1380 FEALSECMEK HGALMASTME SASMRQCEAM ESASNRQCSI QIWQCEAIEA EVEVQKQHCA 1440 ASNEVSKLMC QALMEIAKAI RERRWADDIF AFGSSSRTAF VAAIAQSQCH LHTTTTFLFA 1500 QCVSRRHLSR QTSSSRWDSC SRTVRLAAIY LDRRHLHVGA PVRALFVSPP SISPDVIFTL 1560 GLLFAHCSSR RHLSRQTSYP RWDSCSRTVC VAAIYLARRH LHVGTSVRAV CVSPPSLSPD 1620 AVFARRRKLS STSPAQAFPR RHRSRPSFFS SSQSVFSTMT NTRNSGKGKR ERDSQKTEAA 1680 GVVKRGRHQA KKLKASSGGA LVIRRSAREE WVEEASSGQD DDFESEADTF HGRKGTLRDV 1740 SNARMVSGEE DVDGGKDGGH GVARGKDEAA GEVGGGVATR EERGQPTTPA MRGAVPSKDV 1800 QAAQDVGKHP PMRAPSNPAT PTAGQARRDE GAGVNAAVRG QLVTRIPAKE AAAVGAVVGT 1860 STAGARGGGG DGRDDADDDD PLINRQRRSG NMAALEAKAK LWVDDLRFWN ETEGHGMFKI 1920 IQETRLHLIA IAKGVKPPEI RKSVVLPNAT IPQQKLEDSS ELGAAKERAS RVQTIALRII 1980 HGWIFKSPNR ARGYHCSYGY VLNHVATDLA RAIWFGEDWR VCVSPAVVYN TLELHMKLPI 2040 WYVGGVIHDR HEDDEMASYQ ESTTQRLVGA FTNAVDTGEG VDGGRISYER LRNVADCMRL 2100 LLSAAMWIMR MAGDNLRSHY EASHLVELIA KPTLIASLHR SFDARRHVLQ CVNAVTEKMG 2160 KPPMTLVDPP VYIPDWKMGK PPAAAADDDD DVDDEDVHDD DDDRDDDDDG DDNDDDVDDV 2220 DDDADDRDDD GDDDDGDDDD GDDDDSDDDD GDDDNDDDDD DDDVHD

Sequence ? help Back to Top

Protein Sequence Length: 2266 aa Download sequence

MAAAEEMERK FAANFLEGED YPRDGDLTEL ARARAELAAL QNKFENMGFV SGHVTYMEQI  60
GPKRVILSKT PSISAPMLPP PVRALPPPPV EAPVRSNESV AIFELTKTLI SLIQESKKEQ  120
REHNARLEAM MRNMRPIAVR APPMPQGLAP APALGGVANN MNVCYACHQP RHLARDCPHR  180
PPQQRTGAAP MVAAPIANGS GRVGALMEEV EGGGSALTTS EEAAELIALD QYVSLGYPGL  240
GMIGTIRPAP EPKEVADWRP SLGEMESGGP TFVTGEIDVL NIIRTLDHRI PVPIGHLLSI  300
SEQANERMLQ HCKANPKRFA LARTPNAKAK SPAPEENPAS TPDPIRRAMN MTFQNFVNKT  360
RLTQGMINFC VIVYMDDILV YSETYHGHAQ HIEWTLGALR DAGFKIALEK SEFFLSKISF  420
LGYVVTRGGL RPDSRKVAAV KEAPVPTSLT QVRAFLGLVS YYRRFIKGFA AIARPLTNLL  480
RKDQPLSWDA ECQQAFATLK DALATTPILI RPDPSKQFIL ITDWQPDAIS AILAQKGNNG  540
REHVIEYASR TVPDERRNDS APQGECYAVV WGIQHFHPYL YGHKFRLVMD HEPLLALKKL  600
TNYTGTIGRW AVRLQEYDFD IVHRKTERHG NADRLTRLHR PAKVPKGEEI TPWKEPDLTN  660
EPKYGQVAVL PREEAEEESE GEFRREAGEA AARLAEVEEE ESEAEEGSAE AKEEEEEEAE  720
EETSEEEEEA YNEYSEGKQS EEEDEGDEEV ESGDDQEPTH DKLEWVQGPD RREENLEAAA  780
QRKKEIEEGK WLAIDPAPND PFKDPEPPKP EHGDLAATTS GAATTRHRSR SRSTSPSASG  840
RPPIRQRVCI LGRLPSRIRR KRGVRKSVAM DGQRPNLATL SDTYPSHRPA ICTGVDKRAA  900
GPSTYEGLPP HMQPLPDSDE GEADVDVSNT VPLGSGSTQE WTGSQLFDGR GAKYRQSFTS  960
LLHEGAQEEE RLPPVDLTFG LRSGSPSSAT RTVLMNPHPD DDAGQVTLVG RGTRGGSTRQ  1020
ETSEKTRERP RVQATSGPSI PRTTAGRPEW MNPPPAFSRG RDSVPRPVER GVSAEDFPFE  1080
GARGDGRRVW KESRQVLRRQ QEESITQGVQ RLRVGERAGQ ADAVGGGGDV WTDGDEVECD  1140
AEEDDSGDVF PLRASNMGGR GSRGRASTNA GRRRKRPSAA SGDAEGEGDG EGGRNYWSVD  1200
HMVALIRAKR DQDAQLQAAG HAFARMRSRE WKWLDVRERL LKVGVDRPAD KCGKKWDNLM  1260
QQFKKIHTFM GMSGKEDFFQ LTSQQRAEKG FSFNMDRTVY EEIKGAKERS HTISPSNVAD  1320
TGGAGGVQLP SAQSATPESV GGGDAARDGN DEDDSSARGA SQTTGSPAGF GKRKNVRQQT  1380
FEALSECMEK HGALMASTME SASMRQCEAM ESASNRQCSI QIWQCEAIEA EVEVQKQHCA  1440
ASNEVSKLMC QALMEIAKAI RERRWADDIF AFGSSSRTAF VAAIAQSQCH LHTTTTFLFA  1500
QCVSRRHLSR QTSSSRWDSC SRTVRLAAIY LDRRHLHVGA PVRALFVSPP SISPDVIFTL  1560
GLLFAHCSSR RHLSRQTSYP RWDSCSRTVC VAAIYLARRH LHVGTSVRAV CVSPPSLSPD  1620
AVFARRRKLS STSPAQAFPR RHRSRPSFFS SSQSVFSTMT NTRNSGKGKR ERDSQKTEAA  1680
GVVKRGRHQA KKLKASSGGA LVIRRSAREE WVEEASSGQD DDFESEADTF HGRKGTLRDV  1740
SNARMVSGEE DVDGGKDGGH GVARGKDEAA GEVGGGVATR EERGQPTTPA MRGAVPSKDV  1800
QAAQDVGKHP PMRAPSNPAT PTAGQARRDE GAGVNAAVRG QLVTRIPAKE AAAVGAVVGT  1860
STAGARGGGG DGRDDADDDD PLINRQRRSG NMAALEAKAK LWVDDLRFWN ETEGHGMFKI  1920
IQETRLHLIA IAKGVKPPEI RKSVVLPNAT IPQQKLEDSS ELGAAKERAS RVQTIALRII  1980
HGWIFKSPNR ARGYHCSYGY VLNHVATDLA RAIWFGEDWR VCVSPAVVYN TLELHMKLPI  2040
WYVGGVIHDR HEDDEMASYQ ESTTQRLVGA FTNAVDTGEG VDGGRISYER LRNVADCMRL  2100
LLSAAMWIMR MAGDNLRSHY EASHLVELIA KPTLIASLHR SFDARRHVLQ CVNAVTEKMG  2160
KPPMTLVDPP VYIPDWKMGK PPAAAADDDD DVDDEDVHDD DDDRDDDDDG DDNDDDVDDV  2220
DDDADDRDDD GDDDDGDDDD GDDDDSDDDD GDDDNDDDDD DDDVHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein