PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG82199.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 415aa    MW: 44904.3 Da    PI: 6.331
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG82199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix347.7e-11229304270
    trihelix   2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                 W + e+  L ++r+e+++ ++       r++lk++ W+ v ++mr++g++r+  +Ck+k++++   y+++k++e+ 
  GBG82199.1 229 WGETETEWLCRFRNEVKDMMGnetetygRARLKEGFWKIVEQRMRDKGYNRKDDECKNKFNQILDFYRRLKANERW 304
                 999***********77777772222222457****************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MNNVTGEPRP NVVTDGPGLS SPVTPVHKLR IGAGGEDEQI LKHRLRMHAM AIPDIVEGAV  60
GGCESPGPRT RERGDGGPSP SGGVSRVSDA VHSQERSAPS HMSPVGQESH GHSQITTPAG  120
GRTQQGSEVG APHSPYVLNQ IILENELGVH PVDHVPYHAD GSDAGGVHTL PQHKPPRCGS  180
FGTAGIGTPS PATGRSRSRQ VPSTADAGAP TPTGVSARSG SPSPNNDPWG ETETEWLCRF  240
RNEVKDMMGN ETETYGRARL KEGFWKIVEQ RMRDKGYNRK DDECKNKFNQ ILDFYRRLKA  300
NERWSGYPSY WDMNSARRKR YNVDFVLRRS WYDIIDPAEK DKDSINLTNL LDSGADEERV  360
EDNEEARDAD GGEDGGGEDT VPGAGGSTGG LQGIGFEPTL GKRKRSSVNV REASV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.18e-06Trihelix family protein