PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82431.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-YC

Protein Properties

Length: 600aa MW: 64065 Da PI: 5.175

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.4	1.1e-16	77	152	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l +++ rt+ + ++a+v + +fdfl d+v r GBG82431.1 77 QARIKKIMQADEDVGKIAQATPVLISKALELFLQDLCGKTYEIMAARGGRTIGINHLKACVMSNAVFDFLKDVVSR 152 69**************************************9999999**********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MTQVRFRLAA DRSGSTTTNL RAGVELQSAS CGLVTEELVC IGKHEEEAGH AIPRGSRPLP 60 QFVSPRNAEG GKATWCQARI KKIMQADEDV GKIAQATPVL ISKALELFLQ DLCGKTYEIM 120 AARGGRTIGI NHLKACVMSN AVFDFLKDVV SRAPDVASEA STEDKSIGST RSRRVWDGQS 180 DESGSDKDDV KRLRMDPSRD PVERQRGQGR GRGRPARARV HVPWAAITSR EGPRVPEERC 240 EERYGCRARR TQSEDSLNDG SLVDRVRLEQ APTHAAAVQR PVSSLLSGSG NGHSERGAVD 300 TRSWGDGSAE GGGGGIVGAG RIVQQPRANS LTSGVFRTAD GWGVDFTVHG QMGGVFSTRE 360 TLQPRFADNF YQGVLDHHVG VQKLLPNNCF VTSRGPTGEA SAVVEALASG ISTECIGGNF 420 PTCRFADSPQ QDAGGVASSN ASPGSRVTER LIDDITTVTR AGDLSCVTSC GQEEGASLKR 480 QPRDFDLNMD LMANADSALV SLANGGGEAI ALGGGGPITV QVPVHDGEGG MKAWAEARQH 540 DRDRDSMKVQ RLNGWGSLCD SVAVEGLPGS LYRSRGGVIM DVGEEEEGEE EDYDNFDEDD

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MTQVRFRLAA DRSGSTTTNL RAGVELQSAS CGLVTEELVC IGKHEEEAGH AIPRGSRPLP  60
QFVSPRNAEG GKATWCQARI KKIMQADEDV GKIAQATPVL ISKALELFLQ DLCGKTYEIM  120
AARGGRTIGI NHLKACVMSN AVFDFLKDVV SRAPDVASEA STEDKSIGST RSRRVWDGQS  180
DESGSDKDDV KRLRMDPSRD PVERQRGQGR GRGRPARARV HVPWAAITSR EGPRVPEERC  240
EERYGCRARR TQSEDSLNDG SLVDRVRLEQ APTHAAAVQR PVSSLLSGSG NGHSERGAVD  300
TRSWGDGSAE GGGGGIVGAG RIVQQPRANS LTSGVFRTAD GWGVDFTVHG QMGGVFSTRE  360
TLQPRFADNF YQGVLDHHVG VQKLLPNNCF VTSRGPTGEA SAVVEALASG ISTECIGGNF  420
PTCRFADSPQ QDAGGVASSN ASPGSRVTER LIDDITTVTR AGDLSCVTSC GQEEGASLKR  480
QPRDFDLNMD LMANADSALV SLANGGGEAI ALGGGGPITV QVPVHDGEGG MKAWAEARQH  540
DRDRDSMKVQ RLNGWGSLCD SVAVEGLPGS LYRSRGGVIM DVGEEEEGEE EDYDNFDEDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	8e-33	NF-YC family protein