PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82432.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-YC

Protein Properties

Length: 599aa MW: 63977.9 Da PI: 5.175

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.4	1.1e-16	77	152	23	98
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l +++ rt+ + ++a+v + +fdfl d+v r GBG82432.1 77 QARIKKIMQADEDVGKIAQATPVLISKALELFLQDLCGKTYEIMAARGGRTIGINHLKACVMSNAVFDFLKDVVSR 152 69**************************************9999999**********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MTQVRFRLAA DRSGSTTTNL RAGVELQSAS CGLVTEELVC IGKHEEEAGH AIPRGSRPLP 60 QFVSPRNAEG GKATWCQARI KKIMQADEDV GKIAQATPVL ISKALELFLQ DLCGKTYEIM 120 AARGGRTIGI NHLKACVMSN AVFDFLKDVV SRAPDVASEA STEDKSIGST RRRVWDGQSD 180 ESGSDKDDVK RLRMDPSRDP VERQRGQGRG RGRPARARVH VPWAAITSRE GPRVPEERCE 240 ERYGCRARRT QSEDSLNDGS LVDRVRLEQA PTHAAAVQRP VSSLLSGSGN GHSERGAVDT 300 RSWGDGSAEG GGGGIVGAGR IVQQPRANSL TSGVFRTADG WGVDFTVHGQ MGGVFSTRET 360 LQPRFADNFY QGVLDHHVGV QKLLPNNCFV TSRGPTGEAS AVVEALASGI STECIGGNFP 420 TCRFADSPQQ DAGGVASSNA SPGSRVTERL IDDITTVTRA GDLSCVTSCG QEEGASLKRQ 480 PRDFDLNMDL MANADSALVS LANGGGEAIA LGGGGPITVQ VPVHDGEGGM KAWAEARQHD 540 RDRDSMKVQR LNGWGSLCDS VAVEGLPGSL YRSRGGVIMD VGEEEEGEEE DYDNFDEDD

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MTQVRFRLAA DRSGSTTTNL RAGVELQSAS CGLVTEELVC IGKHEEEAGH AIPRGSRPLP  60
QFVSPRNAEG GKATWCQARI KKIMQADEDV GKIAQATPVL ISKALELFLQ DLCGKTYEIM  120
AARGGRTIGI NHLKACVMSN AVFDFLKDVV SRAPDVASEA STEDKSIGST RRRVWDGQSD  180
ESGSDKDDVK RLRMDPSRDP VERQRGQGRG RGRPARARVH VPWAAITSRE GPRVPEERCE  240
ERYGCRARRT QSEDSLNDGS LVDRVRLEQA PTHAAAVQRP VSSLLSGSGN GHSERGAVDT  300
RSWGDGSAEG GGGGIVGAGR IVQQPRANSL TSGVFRTADG WGVDFTVHGQ MGGVFSTRET  360
LQPRFADNFY QGVLDHHVGV QKLLPNNCFV TSRGPTGEAS AVVEALASGI STECIGGNFP  420
TCRFADSPQQ DAGGVASSNA SPGSRVTERL IDDITTVTRA GDLSCVTSCG QEEGASLKRQ  480
PRDFDLNMDL MANADSALVS LANGGGEAIA LGGGGPITVQ VPVHDGEGGM KAWAEARQHD  540
RDRDSMKVQR LNGWGSLCDS VAVEGLPGSL YRSRGGVIMD VGEEEEGEEE DYDNFDEDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	5e-33	NF-YC family protein