PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82869.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MIKC_MADS

Protein Properties

Length: 541aa MW: 60017.2 Da PI: 10.3654

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82869.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	45	94	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n s rqvtfskRrng+lKKA+ELS+LCda++aviifs++gkl+ey+ GBG82869.1 45 KRIDNASSRQVTFSKRRNGLLKKAYELSILCDADIAVIIFSPSGKLFEYA 94 79***********************************************8 PP
2	K-box	59.7	1.2e-20	117	203	10	96
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + ++el++L++ e+++re R++ Ge+L+ Ls +L+qLe qLe+sl+++Rs++ + ++++++ l++k el++ a ++ GBG82869.1 117 RVDNNDYINRELRRLREDCESMKRERRQFCGEELDALSSDNLEQLEMQLEESLRRVRSRRLDAYRNELDILRRKVSELEQSAAANSA 203 45677899***********************************************************************98877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MELDTAHIDT SQVLSSAEEI PRYPKPPPLP HPLKGKMGRG KVEIKRIDNA SSRQVTFSKR 60 RNGLLKKAYE LSILCDADIA VIIFSPSGKL FEYANSNMKD LLERYMNCPQ ETREKRRVDN 120 NDYINRELRR LREDCESMKR ERRQFCGEEL DALSSDNLEQ LEMQLEESLR RVRSRRLDAY 180 RNELDILRRK VSELEQSAAA NSAAVAAASA MVVTASTVAA QQQSMGMPPP PSACSSPCSQ 240 VSSAVAAAAA VAAGLSVAQG GASAHHHHVQ HSAQQQQQAA AAAAAAASQQ SAQQQAAAQQ 300 QAAAQQAAAQ QVAAQHAAAA AAAQQQQQQQ QQQHQQQQQQ QGPQHHLGSM AVGLHSQGMR 360 EMIRLQHGAL QGLSMPMLAA PGGGIPLGMF AGPPLRRKKK KRKKEKKKTS KNDEQEEEKS 420 AAGVRKWRKG KVAVIISTII GNKQIAEKGD RNDDDSRVHS WKAKTWREAR VSQLMGMNLD 480 TILVMMTMMM MMMMEKGGEL AKGESNCLVM MMMMMKFMMV KIMTKMMMMM MMIWRWTKAR 540 E

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MELDTAHIDT SQVLSSAEEI PRYPKPPPLP HPLKGKMGRG KVEIKRIDNA SSRQVTFSKR  60
RNGLLKKAYE LSILCDADIA VIIFSPSGKL FEYANSNMKD LLERYMNCPQ ETREKRRVDN  120
NDYINRELRR LREDCESMKR ERRQFCGEEL DALSSDNLEQ LEMQLEESLR RVRSRRLDAY  180
RNELDILRRK VSELEQSAAA NSAAVAAASA MVVTASTVAA QQQSMGMPPP PSACSSPCSQ  240
VSSAVAAAAA VAAGLSVAQG GASAHHHHVQ HSAQQQQQAA AAAAAAASQQ SAQQQAAAQQ  300
QAAAQQAAAQ QVAAQHAAAA AAAQQQQQQQ QQQHQQQQQQ QGPQHHLGSM AVGLHSQGMR  360
EMIRLQHGAL QGLSMPMLAA PGGGIPLGMF AGPPLRRKKK KRKKEKKKTS KNDEQEEEKS  420
AAGVRKWRKG KVAVIISTII GNKQIAEKGD RNDDDSRVHS WKAKTWREAR VSQLMGMNLD  480
TILVMMTMMM MMMMEKGGEL AKGESNCLVM MMMMMKFMMV KIMTKMMMMM MMIWRWTKAR  540
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	403	LRRKKKKRK
2	396	402	RRKKKKR
3	396	404	RRKKKKRKK
4	396	405	RRKKKKRKKE
5	396	406	RRKKKKRKKEK
6	397	402	RKKKKR
7	397	403	RRKKKKR
8	397	406	RRKKKKRKKE
9	397	407	RRKKKKRKKEK
10	398	403	KKKKRK
11	398	404	RRKKKKR
12	399	407	RRKKKKRKK
13	400	404	KKRKK
14	401	431	KRKKEKKKTSKNDEQEEEKSAAGVRKWRKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	8e-35	MIKC_MADS family protein