PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83377.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 2096aa MW: 233499 Da PI: 7.0715

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83377.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.9	7.1e-10	1162	1234	2	67
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ + aL++a+r m++++ r k ++ +We+v +++++ g++r + C +kw+nl +++kk+ + GBG83377.1 1162 WSVGDTIALVRAKRdqdlyiiGMGTSFPRMKTREWKWEDVRARLQSMGVTRDVVDCGKKWDNLMQQFKKVHKF 1234 8889999*****999999999********************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 2096 aa Download sequence
MADPDVELSL KFQERDIEEG KELLDVHHHL PWIVLGRHDD GNYNLQAWNY ENDTRVDWEL 60 PKGIKPWGVK FVGQEVRVMV VLKTQLVEYE IPPDSSSSTE SWTFALDTTD FSNWAVHSSR 120 RRVVLAVHPP GSSRYNIYFW DLDQNLHEER GTNLPEMTKM CFHPLESDIF VTVHGNGTIN 180 IWNAKTMTVL RTLEAEREVT SVRFCTKPQT SLLITGHKSG KLQVWDYPRK KCLTTFDAHE 240 HAVEHAFFHP QLPYILSASE DGAIKVWSDS NYQFKMLFSG LNGLSGSLLC GNDNTLVRLC 300 KKTLRVITIV GEHDSAAAPK HNFSSLKIKQ LETGLSTLPL KIKQLESVLS TLSLKIKQLE 360 TVLSTLSPKI KPLESVLSRL AAIKIELDVV DTGPIWSEHS YDNNARQEWI GWKNKVSNMF 420 KNVRVDIMDI GSQPSKENIY SERVKLLETE FSSSNRDGYP HQRVNDARKW RTVVNDITKE 480 LETKLQELQT KLLESQAELA KLQAELAKLQ AELAKLQAEL AKLQAELSNL RLERQAFEKE 540 LERLQSEYDT ERGMHSERVK QIGTELSTLR AERRALEEGF EKKRQTKHQR VKELDTELSN 600 VRMQRQALGE KVERFQSMHD REKGMESERV KQLETELSSA RAERMVVEQG FEEERQIHAK 660 GMKELETELS DVRTEMQGFG ERFERFQSEH ETEKGMHLES IMKLENEISN LLAEREELEE 720 SFEKPTVGAQ GLECRSEMDG GASEILKRCD GVPKGVSGGD MHPFREFSVD ELKNATNSFH 780 DDCKLEQRHY GCMYKGKITP VVVKRLGYEK STAQNQHTRL TMAILDLLKS LQHPHLQTLL 840 GVCYKGNCLV YEHMAHGNVK DWISSAKVSQ SGFLPWYIRL RIIAQVAQAV SFLHSHQSPG 900 GGPIVHCSIT LDNIFLDNSF VAKIANVDMA VLAPVFAKDG ETPDMNRSDV QYLAPEFFQT 960 EVFTPETDTY AFGITLLEML TGKFKNALGI MKDAVEDATT FRSTLDPNAG SWDIDLALEA 1020 ARVGLRCASL NKHHRPSITT GEGAVLPALE SIAHKVELAD SLEEERRISL CGGNRNESTS 1080 TVGGGVGARE RPEWMRLTVV TCVAKRIRRS SWTAAAGGFA SGRKGTNGGA TARKGHATKT 1140 RRSKKMDDGT GRSDGEGGRN FWSVGDTIAL VRAKRDQDLY IIGMGTSFPR MKTREWKWED 1200 VRARLQSMGV TRDVVDCGKK WDNLMQQFKK VHKFHNLSGG RDYFKLASKA RRSEGFIFVM 1260 DRSVYDEMEA MTKGDHMIHP KNLANTGAVG GVQMPAGAGA ARDTMATEGG GEAADEEPGS 1320 TKDSTFSAGS GSGYRKRKNM RQQTFEVVAE VMDKHGALMA STMDSVSKRQ CSMMLRQCEI 1380 LESEVEVQRK HYAAADEANG MISEGRRTRC TATTSTRDAL CLFSSSSHNT ATTKSPVSSL 1440 SSSSWISSMS SSIIIVDLVA LLLAADLYRP FGGPASFSHE DLLLAAEQCP QGSSPSRLGL 1500 LQCRCRSSLW ILSLSFSPRI LLAADPYRPF GGPASLSRED LLVAAEKCPQ GSSPSRVRPQ 1560 TAIDGGGKHV CARRRLWEEA GNIPADNQGR ERGRRHVPKA KRLRSEEASA SLPLRRGRSW 1620 TLTNVEEDDD VFTTEEEAAE DNVLAPRGSS LQSSSDQSGA RRLVTPPPEA QQVSAHNTQK 1680 AKEVVVDVGG EDDEPLESRR QRNVTQGATA TAVSIRAATE ERPPQGDLPS TPSQPRPRNT 1740 AAEGGSMERG GGEGALQEAC VASGGAITAA AAGSSGNDGV VARAREEVPV VEREAMRSDN 1800 KGERENEDPL LNRVRRGGMA RDLADRARLW VDDKAFWTTG EGRRLHNIVH ESLEYFVAIA 1860 SGLQTPVMPR SVIMPKSSTT LIRIADPAQL QQVIARVTAA ENIALRVLHG WVFKSGNRPR 1920 GFNVAFQYVL ELVATDIARV MWYGKEWSNV VSAVVHVHTI DLNMDLPLWF AGANIEDRLE 1980 DDDMTAHQEA TVICITHAFR AAVQMGGIVD GGFISHNRLS RIADCFRLLL AACMWLMCME 2040 GDNPRSHYQA FYFAKLVAKP TLVASMHRAF DHRRSVIRAT NVVTERLGKA NATFGE

Sequence ? help Back to Top

Protein Sequence Length: 2096 aa Download sequence

MADPDVELSL KFQERDIEEG KELLDVHHHL PWIVLGRHDD GNYNLQAWNY ENDTRVDWEL  60
PKGIKPWGVK FVGQEVRVMV VLKTQLVEYE IPPDSSSSTE SWTFALDTTD FSNWAVHSSR  120
RRVVLAVHPP GSSRYNIYFW DLDQNLHEER GTNLPEMTKM CFHPLESDIF VTVHGNGTIN  180
IWNAKTMTVL RTLEAEREVT SVRFCTKPQT SLLITGHKSG KLQVWDYPRK KCLTTFDAHE  240
HAVEHAFFHP QLPYILSASE DGAIKVWSDS NYQFKMLFSG LNGLSGSLLC GNDNTLVRLC  300
KKTLRVITIV GEHDSAAAPK HNFSSLKIKQ LETGLSTLPL KIKQLESVLS TLSLKIKQLE  360
TVLSTLSPKI KPLESVLSRL AAIKIELDVV DTGPIWSEHS YDNNARQEWI GWKNKVSNMF  420
KNVRVDIMDI GSQPSKENIY SERVKLLETE FSSSNRDGYP HQRVNDARKW RTVVNDITKE  480
LETKLQELQT KLLESQAELA KLQAELAKLQ AELAKLQAEL AKLQAELSNL RLERQAFEKE  540
LERLQSEYDT ERGMHSERVK QIGTELSTLR AERRALEEGF EKKRQTKHQR VKELDTELSN  600
VRMQRQALGE KVERFQSMHD REKGMESERV KQLETELSSA RAERMVVEQG FEEERQIHAK  660
GMKELETELS DVRTEMQGFG ERFERFQSEH ETEKGMHLES IMKLENEISN LLAEREELEE  720
SFEKPTVGAQ GLECRSEMDG GASEILKRCD GVPKGVSGGD MHPFREFSVD ELKNATNSFH  780
DDCKLEQRHY GCMYKGKITP VVVKRLGYEK STAQNQHTRL TMAILDLLKS LQHPHLQTLL  840
GVCYKGNCLV YEHMAHGNVK DWISSAKVSQ SGFLPWYIRL RIIAQVAQAV SFLHSHQSPG  900
GGPIVHCSIT LDNIFLDNSF VAKIANVDMA VLAPVFAKDG ETPDMNRSDV QYLAPEFFQT  960
EVFTPETDTY AFGITLLEML TGKFKNALGI MKDAVEDATT FRSTLDPNAG SWDIDLALEA  1020
ARVGLRCASL NKHHRPSITT GEGAVLPALE SIAHKVELAD SLEEERRISL CGGNRNESTS  1080
TVGGGVGARE RPEWMRLTVV TCVAKRIRRS SWTAAAGGFA SGRKGTNGGA TARKGHATKT  1140
RRSKKMDDGT GRSDGEGGRN FWSVGDTIAL VRAKRDQDLY IIGMGTSFPR MKTREWKWED  1200
VRARLQSMGV TRDVVDCGKK WDNLMQQFKK VHKFHNLSGG RDYFKLASKA RRSEGFIFVM  1260
DRSVYDEMEA MTKGDHMIHP KNLANTGAVG GVQMPAGAGA ARDTMATEGG GEAADEEPGS  1320
TKDSTFSAGS GSGYRKRKNM RQQTFEVVAE VMDKHGALMA STMDSVSKRQ CSMMLRQCEI  1380
LESEVEVQRK HYAAADEANG MISEGRRTRC TATTSTRDAL CLFSSSSHNT ATTKSPVSSL  1440
SSSSWISSMS SSIIIVDLVA LLLAADLYRP FGGPASFSHE DLLLAAEQCP QGSSPSRLGL  1500
LQCRCRSSLW ILSLSFSPRI LLAADPYRPF GGPASLSRED LLVAAEKCPQ GSSPSRVRPQ  1560
TAIDGGGKHV CARRRLWEEA GNIPADNQGR ERGRRHVPKA KRLRSEEASA SLPLRRGRSW  1620
TLTNVEEDDD VFTTEEEAAE DNVLAPRGSS LQSSSDQSGA RRLVTPPPEA QQVSAHNTQK  1680
AKEVVVDVGG EDDEPLESRR QRNVTQGATA TAVSIRAATE ERPPQGDLPS TPSQPRPRNT  1740
AAEGGSMERG GGEGALQEAC VASGGAITAA AAGSSGNDGV VARAREEVPV VEREAMRSDN  1800
KGERENEDPL LNRVRRGGMA RDLADRARLW VDDKAFWTTG EGRRLHNIVH ESLEYFVAIA  1860
SGLQTPVMPR SVIMPKSSTT LIRIADPAQL QQVIARVTAA ENIALRVLHG WVFKSGNRPR  1920
GFNVAFQYVL ELVATDIARV MWYGKEWSNV VSAVVHVHTI DLNMDLPLWF AGANIEDRLE  1980
DDDMTAHQEA TVICITHAFR AAVQMGGIVD GGFISHNRLS RIADCFRLLL AACMWLMCME  2040
GDNPRSHYQA FYFAKLVAKP TLVASMHRAF DHRRSVIRAT NVVTERLGKA NATFGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-07	Trihelix family protein