PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83630.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 663aa MW: 72103 Da PI: 9.3494

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.3	1.1e-09	47	96	17	66
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +++++ r k ++ +W++vs++++ g+ r++++C +kw+nl +++kk+ + GBG83630.1 47 RKQTYARMKPREWKWQDVSQRLKNVGVYRNAEKCGKKWDNLMQQFKKVHH 96 5566777889999**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MVATGGRCGG TCGGITGCSE RNTSHGGWSI FTWETRRTRT RRTIHRRKQT YARMKPREWK 60 WQDVSQRLKN VGVYRNAEKC GKKWDNLMQQ FKKVHHFQSP SGGADFFQLT SKERASRGFN 120 FTMDRAVYDE IEGSTGMNHT IHPRNVADTG ASGGVRPPST SYVDPDSVAD GEGGAGREDD 180 EEGSTRGSSK TTDTPGSSGK RKNMRQQTFE ALTECMEKHG ELMASTMRVR ARGNALSRSG 240 GARRWKRRWK CKGSTMPRQT KSANSCAFVG SAMSPRGGGR AKAALKQIVE GXXPAKKGXH 300 QAKRQXKGVQ XVAAGSARDV VEEXXVXEEM TNDDDDFEBD DDEPLXRKAR VGSXGGIRIN 360 EXGEGTPTAR XGGGVAAANQ PVFXBVARDV ARDVXRRDVA GRAKZGAASH ETAQRVLAPV 420 NRPRTPAADV AGGSQAAVEG GTSRSPAVAA RGGAVAVPGE AXISXGGGAR RRCGDMKLPL 480 WFVGVNIVDR HEDDECAAYQ EACVQRLVRD FTSAVGMAEA MDDGRVSYER LKGMAEAMRY 540 LLAATMWIMR MAGDDPRSHY DAWVFVQLTA KTTLLAPMNR QFDARRHITQ SAQVMTDKLG 600 RPPPTFAPPP VYIPDWASKC GVTFSHDATL ASPMEAKRLG WLGTGPPEDD DDDDEGDDKG 660 EGG

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MVATGGRCGG TCGGITGCSE RNTSHGGWSI FTWETRRTRT RRTIHRRKQT YARMKPREWK  60
WQDVSQRLKN VGVYRNAEKC GKKWDNLMQQ FKKVHHFQSP SGGADFFQLT SKERASRGFN  120
FTMDRAVYDE IEGSTGMNHT IHPRNVADTG ASGGVRPPST SYVDPDSVAD GEGGAGREDD  180
EEGSTRGSSK TTDTPGSSGK RKNMRQQTFE ALTECMEKHG ELMASTMRVR ARGNALSRSG  240
GARRWKRRWK CKGSTMPRQT KSANSCAFVG SAMSPRGGGR AKAALKQIVE GXXPAKKGXH  300
QAKRQXKGVQ XVAAGSARDV VEEXXVXEEM TNDDDDFEBD DDEPLXRKAR VGSXGGIRIN  360
EXGEGTPTAR XGGGVAAANQ PVFXBVARDV ARDVXRRDVA GRAKZGAASH ETAQRVLAPV  420
NRPRTPAADV AGGSQAAVEG GTSRSPAVAA RGGAVAVPGE AXISXGGGAR RRCGDMKLPL  480
WFVGVNIVDR HEDDECAAYQ EACVQRLVRD FTSAVGMAEA MDDGRVSYER LKGMAEAMRY  540
LLAATMWIMR MAGDDPRSHY DAWVFVQLTA KTTLLAPMNR QFDARRHITQ SAQVMTDKLG  600
RPPPTFAPPP VYIPDWASKC GVTFSHDATL ASPMEAKRLG WLGTGPPEDD DDDDEGDDKG  660
EGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-09	Trihelix family protein