PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83637.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MIKC_MADS

Protein Properties

Length: 408aa MW: 46193.1 Da PI: 4.3621

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	106	155	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rqvtfskRrng+lKKA+ELSvLCd+++aviifs+tgk++ey+s GBG83637.1 106 RIDNATSRQVTFSKRRNGLLKKAYELSVLCDVDIAVIIFSPTGKIFEYAS 155 8***********************************************86 PP
2	K-box	31.8	5.8e-12	239	286	37	84
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +l GedL ++s+ +L+ Le++L ++l ++R+ ++ +l+++i+ l+++ GBG83637.1 239 RLTGEDLAKMSVSDLEALETKLATGLLSVRKCREGMLRSEIKSLREQR 286 799****************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MCRSPPIDGA ARQVKQDKVL LKKAVICEYS VQVDFAFLEA SQEGVGEWRR EEERGEEGRG 60 AGASEGRASF CQEGKDRTDS SMRPSAPPPL PEKLSKMVRG KIEIRRIDNA TSRQVTFSKR 120 RNGLLKKAYE LSVLCDVDIA VIIFSPTGKI FEYASTSMGD ILDRYNNFPE EQRQRSSRKL 180 DNIDFEFEFE FEFEFEFEFE FEFEFEFEFE FELGFDFDFD LDVDLELGFE LGLNWALTRL 240 TGEDLAKMSV SDLEALETKL ATGLLSVRKC REGMLRSEIK SLREQRIAAS AGLCRYQDRD 300 PSCTAEMHMT TFSMWRGEDG WSHPASHVGG QAPDGHGERG KGGGKHNHSQ EQEDKKAKQD 360 DDDDDDDEED DEAEGEGGGV GIPTWVGTSH HCFEVNDCQP NMTDLFCS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MCRSPPIDGA ARQVKQDKVL LKKAVICEYS VQVDFAFLEA SQEGVGEWRR EEERGEEGRG  60
AGASEGRASF CQEGKDRTDS SMRPSAPPPL PEKLSKMVRG KIEIRRIDNA TSRQVTFSKR  120
RNGLLKKAYE LSVLCDVDIA VIIFSPTGKI FEYASTSMGD ILDRYNNFPE EQRQRSSRKL  180
DNIDFEFEFE FEFEFEFEFE FEFEFEFEFE FELGFDFDFD LDVDLELGFE LGLNWALTRL  240
TGEDLAKMSV SDLEALETKL ATGLLSVRKC REGMLRSEIK SLREQRIAAS AGLCRYQDRD  300
PSCTAEMHMT TFSMWRGEDG WSHPASHVGG QAPDGHGERG KGGGKHNHSQ EQEDKKAKQD  360
DDDDDDDEED DEAEGEGGGV GIPTWVGTSH HCFEVNDCQP NMTDLFCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-31	MIKC_MADS family protein