PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83731.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

bHLH

Protein Properties

Length: 853aa MW: 90167.3 Da PI: 7.7311

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.3	3.1e-14	576	622	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+llP++ +K +Ka+ L +++Y+k+L GBG83731.1 576 RTHSEAERKRRERINGHLSTLRQLLPNS-----TKTDKASLLGDVINYLKDL 622 68***********************9.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence
MVIGLSTAVT TSVTTAVTTA VTTAVTTAVT AAVEIAGTRV RTQSGTLSTE VDASASENHY 60 DHGEDEQWSE HRPDSPAAVS SYVSSIPEND KLSEDLTMAE SSPHHHQHHQ HHHQHHHHHH 120 SPLSPVRTTG SLPSLSHPCT HAGITASCNK KIRAMKEGQH NDNQPCNNGS RHLQLPQHHN 180 HRNDFHPRER QQAHHGDEGR TAARWSMASS QHLSHPQQQQ QQQQQQQRYR CTGASSGAAM 240 APRSLFPADM PTSHSRYLHF DAGDGGHDSR HRHYHPSSSS PPPPPPLPAT ASSLSPAHVH 300 PGHPLHQRQQ EQHPSQAVCE GSRPLRAAPS GVAVCQQEIG EFGRYNNGGH AHLFVSDQRR 360 GGGGGLREKG GGSCSGACHL SIEKQSDVQQ TALLGHLAPG SRGSGSSRAG GGRRGGGGGG 420 GGGGENGISS QTCNRTGHVA SDDEKIFHHD NLLRHVSLRS KGGSRSGGGG GGGGGGGGEE 480 DDLIDLEEDR KAAGSAGGSE EEREVMAMVD EGGSGNGDAR GVYDGREGGV GGVGVGGGGG 540 GGGGGGGGRA GQIRVAAHQV MPHQPLLDSK SLSALRTHSE AERKRRERIN GHLSTLRQLL 600 PNSTKTDKAS LLGDVINYLK DLKRQVSVVA SPSTNQTATV SSSICHRRSL PATDVEDNIH 660 VTTITLSPME HRSAILRATI CCEDCPDLLP NILKTFQDLR LKIIKAEIVA IDGGRLRIDL 720 FLTETTDDSC SAATKVTVAD SMSTFLVDSN SNLLYHGDSP RGSVGISSCC HLQQHEEGDG 780 ASRTPKVLSS RNPQPRIALF CPRRIKEALQ AVIKASEGRG MTNQCNITCA KRQRLCSSCG 840 TGNIAAMSTP SVT

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence

MVIGLSTAVT TSVTTAVTTA VTTAVTTAVT AAVEIAGTRV RTQSGTLSTE VDASASENHY  60
DHGEDEQWSE HRPDSPAAVS SYVSSIPEND KLSEDLTMAE SSPHHHQHHQ HHHQHHHHHH  120
SPLSPVRTTG SLPSLSHPCT HAGITASCNK KIRAMKEGQH NDNQPCNNGS RHLQLPQHHN  180
HRNDFHPRER QQAHHGDEGR TAARWSMASS QHLSHPQQQQ QQQQQQQRYR CTGASSGAAM  240
APRSLFPADM PTSHSRYLHF DAGDGGHDSR HRHYHPSSSS PPPPPPLPAT ASSLSPAHVH  300
PGHPLHQRQQ EQHPSQAVCE GSRPLRAAPS GVAVCQQEIG EFGRYNNGGH AHLFVSDQRR  360
GGGGGLREKG GGSCSGACHL SIEKQSDVQQ TALLGHLAPG SRGSGSSRAG GGRRGGGGGG  420
GGGGENGISS QTCNRTGHVA SDDEKIFHHD NLLRHVSLRS KGGSRSGGGG GGGGGGGGEE  480
DDLIDLEEDR KAAGSAGGSE EEREVMAMVD EGGSGNGDAR GVYDGREGGV GGVGVGGGGG  540
GGGGGGGGRA GQIRVAAHQV MPHQPLLDSK SLSALRTHSE AERKRRERIN GHLSTLRQLL  600
PNSTKTDKAS LLGDVINYLK DLKRQVSVVA SPSTNQTATV SSSICHRRSL PATDVEDNIH  660
VTTITLSPME HRSAILRATI CCEDCPDLLP NILKTFQDLR LKIIKAEIVA IDGGRLRIDL  720
FLTETTDDSC SAATKVTVAD SMSTFLVDSN SNLLYHGDSP RGSVGISSCC HLQQHEEGDG  780
ASRTPKVLSS RNPQPRIALF CPRRIKEALQ AVIKASEGRG MTNQCNITCA KRQRLCSSCG  840
TGNIAAMSTP SVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	419	GGGRRGGGGG
2	411	420	GGGRRGGGGG
3	582	587	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-30	bHLH family protein