PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83755.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB_related

Protein Properties

Length: 858aa MW: 86492.1 Da PI: 6.1903

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.8	4.4e-12	62	100	6	46
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +eE++l +++ ++G+ W++Ia+ m+ gRt++++k++w++ GBG83755.1 62 QEEQQLVFELHGRFGNQ-WARIASQMP-GRTDNEIKNFWNT 100 79***********99.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MAYSLIKLRT DKLGATGHRV LGGRHAGEHD DNDDVVDEEV YNDDDRADPD VDDVMDDVVL 60 MQEEQQLVFE LHGRFGNQWA RIASQMPGRT DNEIKNFWNT KHRKLKQNKV NGEKGSSDGA 120 ANAGAVGGGP GAGTTSTGTN TAESSGAGGG SGGARGGEKG GERGGERGGE RGHHPGKMSN 180 GTGSSSGRST HGPRSKSSGG GGSSHAAASA AVTSLENGGG GGGSGHHHSH MRGSRSHQHH 240 HGSHGWSSLG SASSEGGGGG GGGGGGGGGG GGGGGGGCGF PKVPSTNSAT AYLITHSGVK 300 GSNSSSNLHA HGKQQQQQLH PHQNAGAGFS SLDITVGTCQ HSGGAGCVLG SPSPSTVLDP 360 FDGLHEESTR HLVDDNDATG AAEFETATSS RAGIARVSRG VETCTDLAQS FSAWEEDNFP 420 DHGQGKMHQG PTMVSAATQA ESHSSSGDKE QVESMVEVVG KPACKGIAAA AVAAMGTHSG 480 ASSSGKSGLT SHTAGVTTGS GGGRSGGGSR KREASSQGGV GGIANCVARG HLSGTKAVGS 540 PSKVRKRLSS SSSAATAAAG AAAAASASAS ATPAPPSAAL VTATTGMTIM PSTNSPRRIV 600 IRRNDRQLAA TSTQQSQQQQ PQQQPQQQQQ QQQATSACHL STTPVSPLSG VQPPALPADV 660 FGLWTAAGTL GGAGMVVGGG LEDFCAQSCD WATAGVGPAA HAFDEPTLSV GTEPGKLVWA 720 DPGPMSGHKD GCLYPGPEGD GWISLTEAGI TSTNSYSQLD SSAPTPTMLA LENRSPGMTT 780 SAELDEQLIK VPSHSSTCLA ADLGQQLDIP PLVVEWSDMN GCEQRIPHDY ELIEGVLLEE 840 FDIHLNGPEA LTFLEVPL

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MAYSLIKLRT DKLGATGHRV LGGRHAGEHD DNDDVVDEEV YNDDDRADPD VDDVMDDVVL  60
MQEEQQLVFE LHGRFGNQWA RIASQMPGRT DNEIKNFWNT KHRKLKQNKV NGEKGSSDGA  120
ANAGAVGGGP GAGTTSTGTN TAESSGAGGG SGGARGGEKG GERGGERGGE RGHHPGKMSN  180
GTGSSSGRST HGPRSKSSGG GGSSHAAASA AVTSLENGGG GGGSGHHHSH MRGSRSHQHH  240
HGSHGWSSLG SASSEGGGGG GGGGGGGGGG GGGGGGGCGF PKVPSTNSAT AYLITHSGVK  300
GSNSSSNLHA HGKQQQQQLH PHQNAGAGFS SLDITVGTCQ HSGGAGCVLG SPSPSTVLDP  360
FDGLHEESTR HLVDDNDATG AAEFETATSS RAGIARVSRG VETCTDLAQS FSAWEEDNFP  420
DHGQGKMHQG PTMVSAATQA ESHSSSGDKE QVESMVEVVG KPACKGIAAA AVAAMGTHSG  480
ASSSGKSGLT SHTAGVTTGS GGGRSGGGSR KREASSQGGV GGIANCVARG HLSGTKAVGS  540
PSKVRKRLSS SSSAATAAAG AAAAASASAS ATPAPPSAAL VTATTGMTIM PSTNSPRRIV  600
IRRNDRQLAA TSTQQSQQQQ PQQQPQQQQQ QQQATSACHL STTPVSPLSG VQPPALPADV  660
FGLWTAAGTL GGAGMVVGGG LEDFCAQSCD WATAGVGPAA HAFDEPTLSV GTEPGKLVWA  720
DPGPMSGHKD GCLYPGPEGD GWISLTEAGI TSTNSYSQLD SSAPTPTMLA LENRSPGMTT  780
SAELDEQLIK VPSHSSTCLA ADLGQQLDIP PLVVEWSDMN GCEQRIPHDY ELIEGVLLEE  840
FDIHLNGPEA LTFLEVPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	501	508	GGGRSGGG
2	502	509	GGGRSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62320.1	2e-15	MYB family protein