PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83875.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 912aa MW: 97441.8 Da PI: 10.1491

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.4	2.1e-09	217	290	2	68
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ + aLi a+r+ e +l+ r k ++ +W +v +++++ g+ r+++qC +k +nl +++kk+ + + GBG83875.1 217 WSMNNMIALIGAKRDQEAHLQgmgtaytRMKPREWKWLDVEQRLKKVGVDREAEQCGKKRDNLMQQFKKVHHFQ 290 999999******8888888544433356899999*******************************98755 PP

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence
MCKSARDQGG GHRAGQSPAR SSRSSERSGY AHLPPHLQPL LDTSDEEKDR RPRTVLLRSG 60 STEEWAATEL CGSRGGGYGQ PYTELLQQGP SGDEGDGGVN LSFGLCSGRS SATSRIVIVN 120 NHLDDEGGQV TAIARSSKSP APIQEASGNN GDPPRQQFRT PWGGRRSHVK PLKQSSMGGR 180 GGKTRACARN GRRGKKAVGK GSDAEADVDA EGGRQFWSMN NMIALIGAKR DQEAHLQGMG 240 TAYTRMKPRE WKWLDVEQRL KKVGVDREAE QCGKKRDNLM QQFKKVHHFQ GLLGKHDFFQ 300 FSEKERLSKG FNFNMDRAVY DEILGSTAKS HAINPKNVAD IGAPGSVHLP SATFADPESV 360 GDGDAAAGHD NDEDGSTRGS SQTTGSHVGF GKRKSTRQQT FEALRDCMEK HGALVASTME 420 SNNKRQCSIQ IRQCEALEAE VEADARRTPP SSMIRAFRRD CCDITHHEGH STSVLAILAF 480 VAFIAFVAAF IAFLAILAAF IAFLTILTFV AFIAFLVAFI AFLAILAAFI AFLTILAPVA 540 ILPVVSAIAL VAILPVVTAI APVALPCRHV AAASVLGHVN FIAALFDRGV RTSVSSSPTL 600 SSPPSPRSQS IASSPSSCLS PIRAIVQNVF RAVNDSDDII ATPVIAAGTT ITICCRTLFT 660 VDAEIFSWRL VYLEVGVSCV MSSRGSGRAK SAAKLAVEAT IRKRKGRHVA NKQRKLIEGA 720 SPLPKYVEDD EWVASQVESD FEEEEEVSLK RKSARRGSGA LRIDDVDKRR GGGGRAMMDD 780 VIEVNAAAAS ARGEGTAVGQ QHPAAVARAN EAPEVQEVVV RTRAPATPRA TTSTDVGVNV 840 QAIGQGTKSR SPAQEQRGAA SGGAAHTGEG AREGGRGRSG WGSSRSGRGK GRRGRGGGQG 900 MSQHRGRTTK RW

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence

MCKSARDQGG GHRAGQSPAR SSRSSERSGY AHLPPHLQPL LDTSDEEKDR RPRTVLLRSG  60
STEEWAATEL CGSRGGGYGQ PYTELLQQGP SGDEGDGGVN LSFGLCSGRS SATSRIVIVN  120
NHLDDEGGQV TAIARSSKSP APIQEASGNN GDPPRQQFRT PWGGRRSHVK PLKQSSMGGR  180
GGKTRACARN GRRGKKAVGK GSDAEADVDA EGGRQFWSMN NMIALIGAKR DQEAHLQGMG  240
TAYTRMKPRE WKWLDVEQRL KKVGVDREAE QCGKKRDNLM QQFKKVHHFQ GLLGKHDFFQ  300
FSEKERLSKG FNFNMDRAVY DEILGSTAKS HAINPKNVAD IGAPGSVHLP SATFADPESV  360
GDGDAAAGHD NDEDGSTRGS SQTTGSHVGF GKRKSTRQQT FEALRDCMEK HGALVASTME  420
SNNKRQCSIQ IRQCEALEAE VEADARRTPP SSMIRAFRRD CCDITHHEGH STSVLAILAF  480
VAFIAFVAAF IAFLAILAAF IAFLTILTFV AFIAFLVAFI AFLAILAAFI AFLTILAPVA  540
ILPVVSAIAL VAILPVVTAI APVALPCRHV AAASVLGHVN FIAALFDRGV RTSVSSSPTL  600
SSPPSPRSQS IASSPSSCLS PIRAIVQNVF RAVNDSDDII ATPVIAAGTT ITICCRTLFT  660
VDAEIFSWRL VYLEVGVSCV MSSRGSGRAK SAAKLAVEAT IRKRKGRHVA NKQRKLIEGA  720
SPLPKYVEDD EWVASQVESD FEEEEEVSLK RKSARRGSGA LRIDDVDKRR GGGGRAMMDD  780
VIEVNAAAAS ARGEGTAVGQ QHPAAVARAN EAPEVQEVVV RTRAPATPRA TTSTDVGVNV  840
QAIGQGTKSR SPAQEQRGAA SGGAAHTGEG AREGGRGRSG WGSSRSGRGK GRRGRGGGQG  900
MSQHRGRTTK RW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-09	Trihelix family protein