PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG83973.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 943aa MW: 103217 Da PI: 6.7581

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG83973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	1.9e-09	195	271	2	71
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+ +e ++L++ +r ++++++r + k+ +W++++k+m+ g + C +kw+nl + ykki++ ++ GBG83973.1 195 WSPEEQMLLVRCKReqemhlvGLGHNYERMRTKEWKWDDIAKRMANAGRPKDVDDCLKKWDNLFQNYKKIQRFQNAS 271 999*********55444444555556789*************************************9988764 PP

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence
MYTHLESWRT SLPPPDEEPE TEELPTLPLA SRSTQSLSQT VRAGGSASNE GGEFTSLLHQ 60 GLGDDDNGGL DLRFGLCSGG AREASRTFII NADPSPRGLQ HAGRPTVENI TRGVSNMRAQ 120 SDGGNNDGDG GDHADEGLRE DVEAGDDDGD IPIRPLGKTG GRGKGCSRGV VRGLSVGRGG 180 RGGVSDDGGK SATYWSPEEQ MLLVRCKREQ EMHLVGLGHN YERMRTKEWK WDDIAKRMAN 240 AGRPKDVDDC LKKWDNLFQN YKKIQRFQNA SSQTDFFRLS NEERKEHNFK FQMQRVLCPG 300 EEQLVRSLLV VRPVVTAARR GRSSARDSDN NAGSGAGGGK RKNARQQVLE SLADVMDRHG 360 KLMSATIDSS SKRQCSIFTR QYDILEQEVA FQKAHYAASD ETQRMMCHAL MEIVAAIRGR 420 SPIMSTRGSA RGKKRDDVPD ESQGQGRGRR HVPKAKTARL DDASASVPPR RAQGWAASAE 480 GDYDNDSTRE EEQAEVTASA VQESARQRSP DQTASKRMLT PPPEAQQLRA RDTRTEKVVV 540 VDLGGDDDEP LEKRRLRTLA QGTAAQATTA HVAVDERRLA VRGKPAGAAG AGASGVVAPV 600 GTAREEAAVV AMAREEARGE NKIDRDGGKP GSSWTTGEGR RLYNIVHEMR EYFVAIASGL 660 PVPVVLRSVV LPKSSTKEAR ITDPSQLQQA ISRAAAVENI ALCILHGCVF KSGNRPRGYN 720 LAFQYSLESV ATAIACAMWY GEEWCNVVSG VVCAHTINLS MDLPPWFADT NIEDKPEDND 780 MAAYQESTII CIVHAFRAAV QMGAHIDDDF ISYDRLCRVV DCFRLLFAAC MWIMRMAGDD 840 PCSHYEAFYF ANLVAKPTLV ASMHRSFDHR RSVIRAAKII TERLGKANAT FGEYPDYIPG 900 WAPCGIGFRR NMSITGLEDA KKLDWLGSGA PADDNNDDGK DDA

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence

MYTHLESWRT SLPPPDEEPE TEELPTLPLA SRSTQSLSQT VRAGGSASNE GGEFTSLLHQ  60
GLGDDDNGGL DLRFGLCSGG AREASRTFII NADPSPRGLQ HAGRPTVENI TRGVSNMRAQ  120
SDGGNNDGDG GDHADEGLRE DVEAGDDDGD IPIRPLGKTG GRGKGCSRGV VRGLSVGRGG  180
RGGVSDDGGK SATYWSPEEQ MLLVRCKREQ EMHLVGLGHN YERMRTKEWK WDDIAKRMAN  240
AGRPKDVDDC LKKWDNLFQN YKKIQRFQNA SSQTDFFRLS NEERKEHNFK FQMQRVLCPG  300
EEQLVRSLLV VRPVVTAARR GRSSARDSDN NAGSGAGGGK RKNARQQVLE SLADVMDRHG  360
KLMSATIDSS SKRQCSIFTR QYDILEQEVA FQKAHYAASD ETQRMMCHAL MEIVAAIRGR  420
SPIMSTRGSA RGKKRDDVPD ESQGQGRGRR HVPKAKTARL DDASASVPPR RAQGWAASAE  480
GDYDNDSTRE EEQAEVTASA VQESARQRSP DQTASKRMLT PPPEAQQLRA RDTRTEKVVV  540
VDLGGDDDEP LEKRRLRTLA QGTAAQATTA HVAVDERRLA VRGKPAGAAG AGASGVVAPV  600
GTAREEAAVV AMAREEARGE NKIDRDGGKP GSSWTTGEGR RLYNIVHEMR EYFVAIASGL  660
PVPVVLRSVV LPKSSTKEAR ITDPSQLQQA ISRAAAVENI ALCILHGCVF KSGNRPRGYN  720
LAFQYSLESV ATAIACAMWY GEEWCNVVSG VVCAHTINLS MDLPPWFADT NIEDKPEDND  780
MAAYQESTII CIVHAFRAAV QMGAHIDDDF ISYDRLCRVV DCFRLLFAAC MWIMRMAGDD  840
PCSHYEAFYF ANLVAKPTLV ASMHRSFDHR RSVIRAAKII TERLGKANAT FGEYPDYIPG  900
WAPCGIGFRR NMSITGLEDA KKLDWLGSGA PADDNNDDGK DDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein