PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84175.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Nin-like

Protein Properties

Length: 1899aa MW: 194789 Da PI: 5.656

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	1165	1215	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ GBG84175.1 1165 EKTIDLSVLQQYFAGSLKDAAKQIGVCPTTLKRICRQHGIQRWPSRKINKV 1215 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1899 aa Download sequence
MAMHEAAMAT TGPGPIKLYS AQGQTLGTSH VLPSSPWSSA PLFVFEGQDV AACAPDYGSH 60 RCGDSQHSQT SLDFRRFLVG EGSVCGGGLL GPGGLVDAGG MLFGGSLRGG NAALLMANAI 120 TAAGGSGGGG GAVLASGSSG PNAGGVAAGA GGGVGEVNIC DISAAGECRE PADGAGVCQD 180 SGVAGRMAAA PTGGVSLWNS SVHGGDAFGH SLLYPLQISE LMELDPIEDE LSSESWLQHG 240 GEGSYHRGNG AATGGSQAEA SPAVNSPQQI QHGICSASAS ASASASTSAS PSAFTSASAS 300 ASAPSAANNN FTSKGGGGYP NCDTTFSPVH CSTSMPGNFA FAPSFPAAPT VGQAESMMMA 360 TASFPAVCGA PGGFCANGRI LWSTQLQQQL LAGSAAKMAR SMFVSPLSPA APGSASTCRP 420 SAQCAGIPTL YARSGEQSYE TMRRLWGQGG AGSGGGVLSC EAGGGGALDP GARRQDGDQG 480 GAVEGMGEAG RTVRTTGRLV AREGGATVGF RKRPREEEDR DREGEGEGGG GMCLHADDSG 540 SVHRPRHHHH HHEHDRVSQC GTRNEQQQRM QGERGGGERT DSAILRGEGG IQDEEAGGEC 600 DSARSPNGEG HYYLVGGNDW DEGEGGWGRV TEGGVGGGVS WRSPDAVIAI STKLTQRMMK 660 ALHCINQTRP DVLVQIWVPR SDHGRLVLTT KEAPFAVEQC SQQLARYRGV SEEYIFSGEE 720 ISQYSGLPGR VFKSGKPEWS PNVQFYSPME YLRANHAAEC DVRGSLAAPV FHPGLPRCVA 780 VIEVVMVGED VRFALQMNNI CRALQAPSLA HGLILAEISE VLTQVSQQHD LPIAQCWIPC 840 EREEQQEEKQ LCYIDEIEEG DASSDSKGCK KKKGSWSLST TEAPFYVSNP IMWGFRNACC 900 EHKLEEGQGT PGRAMMTCAP AYAEDVKRLS KLQYPLTHYA RMFGLGAAVS IRLRSSHSGM 960 ADYILEFFLP TSCAAHDQQQ LLLSGLSVSM QWACRTLRPV TKAELESERS NGIMDSGQEV 1020 FQGAVFKGAA MNPATQCNSL GPPAASAGGD GVIVQIIAED AEDDDEEDEE EDSGEGIDND 1080 MEAEGLCGHS RNIQAPEPVC DPEVPIEPEA SNVAAANRRG KGSTGGKAKG GGGGKAGAAA 1140 KGAPEAEGAT GALRRAERGR RGTMEKTIDL SVLQQYFAGS LKDAAKQIGV CPTTLKRICR 1200 QHGIQRWPSR KINKVSRSIK KLQGVINSVQ GKDGGLQINP LLGAAADDLS AIAALGALGA 1260 ATCAAVNNGP GRGSTLSTTA MGGPSSAPGP ATHPVLGVHG ADAGLSTPES AVTAAALGDW 1320 GVTWAAAGSA GGNPGVRGGG QQKGSGGTRG MMQQQALGMG GSPASGTDQT PPINVSAESD 1380 SMENKPLQRS FSSLHPAMGC AVQNQQQQQT GVMGGGGPVR VVDVDTTEEG GSNHGDEVRC 1440 VTERGSDLGN GSHHSGKSFE NRVMQGVSNC ETSCGAWGVK PGLRRGGKAT GWAAVSGMAQ 1500 GPGGYQCLES RGDLKGVPTW SVSGFGTITA AGGSMSGRRG TAVEGVHGQQ GTGVGSNCRA 1560 QEGEIACMSG RGGGDGGSSC GGQVFRWDGT GSPSSTGQLG HVTTMDLLST IESRVHGGDA 1620 ALAALRVING PGDVGGGATP GRDCDMQNTE PAGYGISYSG RRGGIGMTAG QSNTSAMGLT 1680 AAGGGGMTPR SPARPMRMLG NSLTPNLMTA SSPSNTSCST GMCSGKAGSP GVGAVGMVGA 1740 LGLSPQMLCS SMIDNLPQWP RGFRGGGRDS NAVTTSDVTV KVTFGQDTAR FRLPSGHCFD 1800 DLQQEVAQRL KLDTTTLVMK YLDDEGEYVL LSSNEDLMEC IDVSRNAGNN TIKLTARCEG 1860 GSGLQYGARA ACTGGCGVPN IGYYDAGMAS LSDMNSPQR

Sequence ? help Back to Top

Protein Sequence Length: 1899 aa Download sequence

MAMHEAAMAT TGPGPIKLYS AQGQTLGTSH VLPSSPWSSA PLFVFEGQDV AACAPDYGSH  60
RCGDSQHSQT SLDFRRFLVG EGSVCGGGLL GPGGLVDAGG MLFGGSLRGG NAALLMANAI  120
TAAGGSGGGG GAVLASGSSG PNAGGVAAGA GGGVGEVNIC DISAAGECRE PADGAGVCQD  180
SGVAGRMAAA PTGGVSLWNS SVHGGDAFGH SLLYPLQISE LMELDPIEDE LSSESWLQHG  240
GEGSYHRGNG AATGGSQAEA SPAVNSPQQI QHGICSASAS ASASASTSAS PSAFTSASAS  300
ASAPSAANNN FTSKGGGGYP NCDTTFSPVH CSTSMPGNFA FAPSFPAAPT VGQAESMMMA  360
TASFPAVCGA PGGFCANGRI LWSTQLQQQL LAGSAAKMAR SMFVSPLSPA APGSASTCRP  420
SAQCAGIPTL YARSGEQSYE TMRRLWGQGG AGSGGGVLSC EAGGGGALDP GARRQDGDQG  480
GAVEGMGEAG RTVRTTGRLV AREGGATVGF RKRPREEEDR DREGEGEGGG GMCLHADDSG  540
SVHRPRHHHH HHEHDRVSQC GTRNEQQQRM QGERGGGERT DSAILRGEGG IQDEEAGGEC  600
DSARSPNGEG HYYLVGGNDW DEGEGGWGRV TEGGVGGGVS WRSPDAVIAI STKLTQRMMK  660
ALHCINQTRP DVLVQIWVPR SDHGRLVLTT KEAPFAVEQC SQQLARYRGV SEEYIFSGEE  720
ISQYSGLPGR VFKSGKPEWS PNVQFYSPME YLRANHAAEC DVRGSLAAPV FHPGLPRCVA  780
VIEVVMVGED VRFALQMNNI CRALQAPSLA HGLILAEISE VLTQVSQQHD LPIAQCWIPC  840
EREEQQEEKQ LCYIDEIEEG DASSDSKGCK KKKGSWSLST TEAPFYVSNP IMWGFRNACC  900
EHKLEEGQGT PGRAMMTCAP AYAEDVKRLS KLQYPLTHYA RMFGLGAAVS IRLRSSHSGM  960
ADYILEFFLP TSCAAHDQQQ LLLSGLSVSM QWACRTLRPV TKAELESERS NGIMDSGQEV  1020
FQGAVFKGAA MNPATQCNSL GPPAASAGGD GVIVQIIAED AEDDDEEDEE EDSGEGIDND  1080
MEAEGLCGHS RNIQAPEPVC DPEVPIEPEA SNVAAANRRG KGSTGGKAKG GGGGKAGAAA  1140
KGAPEAEGAT GALRRAERGR RGTMEKTIDL SVLQQYFAGS LKDAAKQIGV CPTTLKRICR  1200
QHGIQRWPSR KINKVSRSIK KLQGVINSVQ GKDGGLQINP LLGAAADDLS AIAALGALGA  1260
ATCAAVNNGP GRGSTLSTTA MGGPSSAPGP ATHPVLGVHG ADAGLSTPES AVTAAALGDW  1320
GVTWAAAGSA GGNPGVRGGG QQKGSGGTRG MMQQQALGMG GSPASGTDQT PPINVSAESD  1380
SMENKPLQRS FSSLHPAMGC AVQNQQQQQT GVMGGGGPVR VVDVDTTEEG GSNHGDEVRC  1440
VTERGSDLGN GSHHSGKSFE NRVMQGVSNC ETSCGAWGVK PGLRRGGKAT GWAAVSGMAQ  1500
GPGGYQCLES RGDLKGVPTW SVSGFGTITA AGGSMSGRRG TAVEGVHGQQ GTGVGSNCRA  1560
QEGEIACMSG RGGGDGGSSC GGQVFRWDGT GSPSSTGQLG HVTTMDLLST IESRVHGGDA  1620
ALAALRVING PGDVGGGATP GRDCDMQNTE PAGYGISYSG RRGGIGMTAG QSNTSAMGLT  1680
AAGGGGMTPR SPARPMRMLG NSLTPNLMTA SSPSNTSCST GMCSGKAGSP GVGAVGMVGA  1740
LGLSPQMLCS SMIDNLPQWP RGFRGGGRDS NAVTTSDVTV KVTFGQDTAR FRLPSGHCFD  1800
DLQQEVAQRL KLDTTTLVMK YLDDEGEYVL LSSNEDLMEC IDVSRNAGNN TIKLTARCEG  1860
GSGLQYGARA ACTGGCGVPN IGYYDAGMAS LSDMNSPQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1125	1133	GGKAKGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-68	Nin-like family protein