PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85133.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 553aa MW: 60830.2 Da PI: 4.7809

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.7	9.3e-11	69	145	2	71
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+ + l L++ +r ++++++r + k+ +W++++k m+ g +++ C +kw+nl + ykki++ e+k GBG85133.1 69 WSTDNQLRLVRCKReqdmhlaGLGHNYGRMRTKEWKWDDIAKWMANMGTPKEADDCSKKWDNLFQNYKKIQRFEGKS 145 8888889999999944433334445555789****************************************999874 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MAAFRDDVDD GDIEDMEAVD DDDEVKIRTL GKTTGRAKGC GRRGGRGRSS GRGGRGGASD 60 DGGKPAAYWS TDNQLRLVRC KREQDMHLAG LGHNYGRMRT KEWKWDDIAK WMANMGTPKE 120 ADDCSKKWDN LFQNYKKIQR FEGKSGEADF FKLSNEERKE HNFKFRMERM LNNEIHRACQ 180 ATTPFSLPTS PTLVVRKGCS CRGEEREVGS LLEVKPAVMA AQMTVPRLGT LIKTQAPEWT 240 GMGGEDQAGP MIMTSSRLPL KVRAIVGGSA AQATTCDERS INVEVNEDAR VDDSQGGVVP 300 ERNAMQPVTL STTPRQQRTI VAIGGAMPRQ AVPLPATPRQ HHAGENVGSG VAAATATTVE 360 PPQPRHAGAD VGVVQGAPQV GTGEGCTEED VASAMEVARA EKKRASEDDE PLVNRVRKGG 420 LAKDLAEQVR LWVDDKSLWT SEEGHRLYNI INEAREHLVV VTSGLPLANV LRSVAMPRSN 480 IAEIRITDAG QYDSELHHYD DDDDNDDDDE DDDDDDNDDD DGHGDDDDNH DRDDELAMWE 540 KLGKALHGGR HWL

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MAAFRDDVDD GDIEDMEAVD DDDEVKIRTL GKTTGRAKGC GRRGGRGRSS GRGGRGGASD  60
DGGKPAAYWS TDNQLRLVRC KREQDMHLAG LGHNYGRMRT KEWKWDDIAK WMANMGTPKE  120
ADDCSKKWDN LFQNYKKIQR FEGKSGEADF FKLSNEERKE HNFKFRMERM LNNEIHRACQ  180
ATTPFSLPTS PTLVVRKGCS CRGEEREVGS LLEVKPAVMA AQMTVPRLGT LIKTQAPEWT  240
GMGGEDQAGP MIMTSSRLPL KVRAIVGGSA AQATTCDERS INVEVNEDAR VDDSQGGVVP  300
ERNAMQPVTL STTPRQQRTI VAIGGAMPRQ AVPLPATPRQ HHAGENVGSG VAAATATTVE  360
PPQPRHAGAD VGVVQGAPQV GTGEGCTEED VASAMEVARA EKKRASEDDE PLVNRVRKGG  420
LAKDLAEQVR LWVDDKSLWT SEEGHRLYNI INEAREHLVV VTSGLPLANV LRSVAMPRSN  480
IAEIRITDAG QYDSELHHYD DDDDNDDDDE DDDDDDNDDD DGHGDDDDNH DRDDELAMWE  540
KLGKALHGGR HWL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-08	Trihelix family protein