PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG85957.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

E2F/DP

Protein Properties

Length: 840aa MW: 88473 Da PI: 6.8333

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG85957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.3	5.3e-23	51	116	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ + ee+ ++l+++a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g GBG85957.1 51 RKDKSLGLLCENFLNLYGNGEEECISLDDAASRL---GV--ERRRIYDIVNVLESVEVVVRKAKNRYTWHG 116 79******************************.....****************************98 PP
2	E2F_TDP	74.7	9.3e-24	237	317	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+ll+qkf++l+ s++++v+l+e+ak L+ + + k+k+RR+YDi+N+L++l+liek ++k+++rw g GBG85957.1 237 RKEKSLGLLSQKFVMLFLISKTRVVSLDEAAKVLLGDctdsgKLKTKVRRLYDIANILSSLHLIEKthmseSRKPAFRWLG 317 79**************************************9*******************9999999****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MERHWGLREG SGMALVHVAC SGTSARADSP LSGTDGEEQL GTSDAPSTYN RKDKSLGLLC 60 ENFLNLYGNG EEECISLDDA ASRLGVERRR IYDIVNVLES VEVVVRKAKN RYTWHGMARL 120 PQALHRIKEA GLREFRMDII RSGADSRSSG LTTRDIVESG SSDEEYEPAS SPPHTCASEA 180 NTQHSWDLPR SPIVRQAGMG APRMGEGEGD DSECDGQVIA SAGSAKKPPL DKRQDCRKEK 240 SLGLLSQKFV MLFLISKTRV VSLDEAAKVL LGDCTDSGKL KTKVRRLYDI ANILSSLHLI 300 EKTHMSESRK PAFRWLGGFH CDLNRGVTNA TRGSAMGKSS GNVPGSHGVP AWLQTPSSSG 360 ITSARMKRKP GKHGGKGANS LCNSEEVSVS PNGKLKKQRM GSVLLHIAAS PTIEDVVTVV 420 EDGRDVSPSR FLAVEDASGQ SPVGDSSGIL HVHESSTSLQ SNVHPCTNVG GVNFVAVPVA 480 PSGVPMLPSW RDWSMAEQQP TLAALSNPSV DTSRVQGQGE EGAQPIAQAS SQGSSVAAST 540 TPSIMIASMP PGSVDDLGQM QPLTPRTGQE GDQPVTIASP LDQEPKPADP AHATQRDSGK 600 FQPQDSGGQA TVNVAAAVPP LPPPPLFAFP PFMVGGLPGL PPSSKPCGYF PVMPTPLVAP 660 FLPISPLPHQ VIPGFPCVPT PPSSPPSSAT LRGAEDQACM PNGPEMAMMA AMHYQSETLN 720 QFFSHYMSAW KAWYMHAVTL MPHLGAPGGQ QSGAAVQVTV SPSSASTSGS AGHQHTFSKA 780 SMVAPLEGIT SVVPSPGSHM VCHTLPVTSA QSGMSSMCGT MDGVAPMALA KVELCGAGSH

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MERHWGLREG SGMALVHVAC SGTSARADSP LSGTDGEEQL GTSDAPSTYN RKDKSLGLLC  60
ENFLNLYGNG EEECISLDDA ASRLGVERRR IYDIVNVLES VEVVVRKAKN RYTWHGMARL  120
PQALHRIKEA GLREFRMDII RSGADSRSSG LTTRDIVESG SSDEEYEPAS SPPHTCASEA  180
NTQHSWDLPR SPIVRQAGMG APRMGEGEGD DSECDGQVIA SAGSAKKPPL DKRQDCRKEK  240
SLGLLSQKFV MLFLISKTRV VSLDEAAKVL LGDCTDSGKL KTKVRRLYDI ANILSSLHLI  300
EKTHMSESRK PAFRWLGGFH CDLNRGVTNA TRGSAMGKSS GNVPGSHGVP AWLQTPSSSG  360
ITSARMKRKP GKHGGKGANS LCNSEEVSVS PNGKLKKQRM GSVLLHIAAS PTIEDVVTVV  420
EDGRDVSPSR FLAVEDASGQ SPVGDSSGIL HVHESSTSLQ SNVHPCTNVG GVNFVAVPVA  480
PSGVPMLPSW RDWSMAEQQP TLAALSNPSV DTSRVQGQGE EGAQPIAQAS SQGSSVAAST  540
TPSIMIASMP PGSVDDLGQM QPLTPRTGQE GDQPVTIASP LDQEPKPADP AHATQRDSGK  600
FQPQDSGGQA TVNVAAAVPP LPPPPLFAFP PFMVGGLPGL PPSSKPCGYF PVMPTPLVAP  660
FLPISPLPHQ VIPGFPCVPT PPSSPPSSAT LRGAEDQACM PNGPEMAMMA AMHYQSETLN  720
QFFSHYMSAW KAWYMHAVTL MPHLGAPGGQ QSGAAVQVTV SPSSASTSGS AGHQHTFSKA  780
SMVAPLEGIT SVVPSPGSHM VCHTLPVTSA QSGMSSMCGT MDGVAPMALA KVELCGAGSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	7e-30	E2F/DP family protein