PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG86719.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 565aa MW: 60942.3 Da PI: 6.059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG86719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33	1.6e-10	308	381	2	68
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +e l+L++ +r ++++++r + k +W++++k+m++ g + + C +kw+nl + ykki++ + GBG86719.1 308 WSLEEQLQLVRCKReqdmhlaGLGHNYGRMRTKDWKWDDIAKRMASAGKPKDADDCMKKWDNLFQNYKKIQRFQ 381 999*********44444444444455778************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MQGRAGVGAG QGGIRAATAE PPQRYDPSMY AHLQSWETPL PPSDEEPETE ELPTLPLASG 60 STQLWSQTVR AGGSGCNEGG EYTSLLQQGL GDDDDGGLDL RFGLCFGGSK EASRTLIIDT 120 DPSPRGVGQG GSQRTDQTTL RARASVAASV GPSAVLRRQG STAPSADRST SNWPACNGAA 180 AGSPRVECAR PSMPERTTPT QSDVRDAGAC RPPVRPVPTV ENITRGVLNM RAHSDGGNDD 240 GVGGDDADER LTEDVDAGDD DEDIPVRPLG KTGGRGRARC RVTVRGRSVG RGGRGCVSDE 300 AGKSVTYWSL EEQLQLVRCK REQDMHLAGL GHNYGRMRTK DWKWDDIAKR MASAGKPKDA 360 DDCMKKWDNL FQNYKKIQRF QNASGRPDFF GLTNEERKEH NFKFRMERAL YNEIHAGMLG 420 NHTIFPPNIA DTGNPYGVQL PRRGGGGGES VGSEAGSEGF PEERSSARES ENNAGSGAGG 480 GKRKNARQQA LESIADVMDR HGELMSSTIE SSSKWQCSIF TRQCDILEQE VAVQKEHYAA 540 SNETQRMMCH ALLEIAAAIR GRTTM

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MQGRAGVGAG QGGIRAATAE PPQRYDPSMY AHLQSWETPL PPSDEEPETE ELPTLPLASG  60
STQLWSQTVR AGGSGCNEGG EYTSLLQQGL GDDDDGGLDL RFGLCFGGSK EASRTLIIDT  120
DPSPRGVGQG GSQRTDQTTL RARASVAASV GPSAVLRRQG STAPSADRST SNWPACNGAA  180
AGSPRVECAR PSMPERTTPT QSDVRDAGAC RPPVRPVPTV ENITRGVLNM RAHSDGGNDD  240
GVGGDDADER LTEDVDAGDD DEDIPVRPLG KTGGRGRARC RVTVRGRSVG RGGRGCVSDE  300
AGKSVTYWSL EEQLQLVRCK REQDMHLAGL GHNYGRMRTK DWKWDDIAKR MASAGKPKDA  360
DDCMKKWDNL FQNYKKIQRF QNASGRPDFF GLTNEERKEH NFKFRMERAL YNEIHAGMLG  420
NHTIFPPNIA DTGNPYGVQL PRRGGGGGES VGSEAGSEGF PEERSSARES ENNAGSGAGG  480
GKRKNARQQA LESIADVMDR HGELMSSTIE SSSKWQCSIF TRQCDILEQE VAVQKEHYAA  540
SNETQRMMCH ALLEIAAAIR GRTTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein