PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG87351.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 526aa MW: 56901.9 Da PI: 9.3342

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG87351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.5	9.3e-10	269	342	2	68
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ ++ +L++ +r ++++++r + k+ +We+++k+m+ g + + C +kw+n+ + ykki + + GBG87351.1 269 WSPKKQIQLVRCKReqemhlaGLGHNYGRMRTKEWKWEDIAKRMANAGRPKDADDCMKKWDNIFQNYKKIHRFQ 342 6677777777777733333333344555788**************************************98755 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MRSRRGMNFQ RFLSPAGRRS CCRRRCSQTV LAGGSASNGR GEYTTLLQQG LGDDDDGGVD 60 LRFGLSSSGG REASGTFIID VDPSPRGVQQ SGSWHTEQST LRGGTSVCVG VRPSSAGRQH 120 GSSAPSADRL TSTCPERNGV AVGSLRIGGT LHSMPKSTTP TQPDLRDDGT CRPAVRQTPS 180 VENITRGVSN MRAHSDGGDD DGGGGDDADG RFGEDVEAGD DDDNIPIRSL GKTGRRGRGR 240 SRGAVRGRSV GRGGRGGVSD DGGKSATYWS PKKQIQLVRC KREQEMHLAG LGHNYGRMRT 300 KEWKWEDIAK RMANAGRPKD ADDCMKKWDN IFQNYKKIHR FQNASGRPDF FRLSNEERKE 360 HNFKFRMERA LYNEIHIGMV GNQTIFPPNI ADTGSPDGVH LPRRGAGVGE SVGSEGAGEG 420 LPEERSTTRD SDSNAASGAG GGKRKNARQQ ALESIADVMD RHGDLMSSTI ESSSKRQCSI 480 FTRQCDILEQ EVAVQKAHYA ASDETQRMMC HALLEIAAAI RGRSTT

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MRSRRGMNFQ RFLSPAGRRS CCRRRCSQTV LAGGSASNGR GEYTTLLQQG LGDDDDGGVD  60
LRFGLSSSGG REASGTFIID VDPSPRGVQQ SGSWHTEQST LRGGTSVCVG VRPSSAGRQH  120
GSSAPSADRL TSTCPERNGV AVGSLRIGGT LHSMPKSTTP TQPDLRDDGT CRPAVRQTPS  180
VENITRGVSN MRAHSDGGDD DGGGGDDADG RFGEDVEAGD DDDNIPIRSL GKTGRRGRGR  240
SRGAVRGRSV GRGGRGGVSD DGGKSATYWS PKKQIQLVRC KREQEMHLAG LGHNYGRMRT  300
KEWKWEDIAK RMANAGRPKD ADDCMKKWDN IFQNYKKIHR FQNASGRPDF FRLSNEERKE  360
HNFKFRMERA LYNEIHIGMV GNQTIFPPNI ADTGSPDGVH LPRRGAGVGE SVGSEGAGEG  420
LPEERSTTRD SDSNAASGAG GGKRKNARQQ ALESIADVMD RHGDLMSSTI ESSSKRQCSI  480
FTRQCDILEQ EVAVQKAHYA ASDETQRMMC HALLEIAAAI RGRSTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-06	Trihelix family protein