PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG87518.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 969aa MW: 105615 Da PI: 7.1757

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG87518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31	6.5e-10	177	251	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + ++L++ +r + ++++r k k+ +We+ sk+m+ g + + C +kw+nl + ykki++ ++ GBG87518.1 177 WSAEDQMLLVRCKReqdmhlaGLSHSYGRMKTKEWKWEDMSKRMANAGRPKDADDCMKKWDNLFQNYKKIQRFQN 251 8888888999999944444444455555789**************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence
MVEVCIWSSP HAALVTSPVG PLPAGQQHGS TAPSVDRLTP TWPAPPGVAA GPLRMGGARS 60 LMPAYTTPVE SGVKDEGTCR VPVRPRPTVE NITRGVPNMR AHSDGGEDDV GFGDDADEGM 120 REDVEAGDDD DDVPIRPLGK TAGTEKGRGR GGVRGRSVGR GGRGGVSGNA GKSPTYWSAE 180 DQMLLVRCKR EQDMHLAGLS HSYGRMKTKE WKWEDMSKRM ANAGRPKDAD DCMKKWDNLF 240 QNYKKIQRFQ NASGRPDFFR LTNKERKEHN FKFRMGRALY NKIHAGMVGN HTIFPPNVVD 300 TGSPDGVQLP RRGAGGGESV CSEAAGEGCP DERSSARESD SNVVSGAGGG KRKNARQQAF 360 ESISDVMERH GALMSSMIES SSKRQCSIFT RQCDILEQEV AVQKAHYAAS DETQRMMCKA 420 LLEIAAAIRG RSAIVPHRGA RGWSQPAEED NDDDFMTVYD QGEATASVGR ESVRQRTMDQ 480 SASKRMSTPP PEAQQLRVRE TWKEKGVVVD LGGEDDEPLE RLRLRSTTQA TTAAVSTART 540 ADDERPITGA LPCTPSQPRQ RNDGRNGASR QRGGGGGVVA DARAAGGEAA GGAGVAVAGV 600 VPPVRPAREE AAVPATVREE GRGQNTNQHD GGEAASSQAR RGVMTNELID RALLWVDDKC 660 FWTRGEGRRL YNIVHETKEY FVAIASGLPP PQLPWSVVVP KSSTRVARIA DQSQLQQAIS 720 RAATVENIAL RILHGWVLKS GNRPRGYNLA FQYSLESVAM DIARAMWYGE EWRNVVSASI 780 CAHTIDLNMD LPLWYAGANI EDRPEDDDMA AYQESTVISI AHSFRPAVQM GAHIDGDFIS 840 YKRLCRVADC FRLAASMWIM RMAGDDPRSH YEAFYFEDLV VRPTLIASMH RSFDHRRSVV 900 RAANVVTERL GKAKVTLGVY PDYIPDWAPC GIGFAHDATI KGPEDAKRLD WLGSGPADDD 960 IKGEGKDNA

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence

MVEVCIWSSP HAALVTSPVG PLPAGQQHGS TAPSVDRLTP TWPAPPGVAA GPLRMGGARS  60
LMPAYTTPVE SGVKDEGTCR VPVRPRPTVE NITRGVPNMR AHSDGGEDDV GFGDDADEGM  120
REDVEAGDDD DDVPIRPLGK TAGTEKGRGR GGVRGRSVGR GGRGGVSGNA GKSPTYWSAE  180
DQMLLVRCKR EQDMHLAGLS HSYGRMKTKE WKWEDMSKRM ANAGRPKDAD DCMKKWDNLF  240
QNYKKIQRFQ NASGRPDFFR LTNKERKEHN FKFRMGRALY NKIHAGMVGN HTIFPPNVVD  300
TGSPDGVQLP RRGAGGGESV CSEAAGEGCP DERSSARESD SNVVSGAGGG KRKNARQQAF  360
ESISDVMERH GALMSSMIES SSKRQCSIFT RQCDILEQEV AVQKAHYAAS DETQRMMCKA  420
LLEIAAAIRG RSAIVPHRGA RGWSQPAEED NDDDFMTVYD QGEATASVGR ESVRQRTMDQ  480
SASKRMSTPP PEAQQLRVRE TWKEKGVVVD LGGEDDEPLE RLRLRSTTQA TTAAVSTART  540
ADDERPITGA LPCTPSQPRQ RNDGRNGASR QRGGGGGVVA DARAAGGEAA GGAGVAVAGV  600
VPPVRPAREE AAVPATVREE GRGQNTNQHD GGEAASSQAR RGVMTNELID RALLWVDDKC  660
FWTRGEGRRL YNIVHETKEY FVAIASGLPP PQLPWSVVVP KSSTRVARIA DQSQLQQAIS  720
RAATVENIAL RILHGWVLKS GNRPRGYNLA FQYSLESVAM DIARAMWYGE EWRNVVSASI  780
CAHTIDLNMD LPLWYAGANI EDRPEDDDMA AYQESTVISI AHSFRPAVQM GAHIDGDFIS  840
YKRLCRVADC FRLAASMWIM RMAGDDPRSH YEAFYFEDLV VRPTLIASMH RSFDHRRSVV  900
RAANVVTERL GKAKVTLGVY PDYIPDWAPC GIGFAHDATI KGPEDAKRLD WLGSGPADDD  960
IKGEGKDNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-07	Trihelix family protein