PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88062.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 648aa MW: 69878.9 Da PI: 7.6985

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.2	4.2e-08	392	467	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegek 69 Wt ++ aL++a+r ++++++r k + +W+++ + + + g+ +r++ C +kw+n+ +++k + + ++ GBG88062.1 392 WTVEHMIALVRAKRdqdlhlaGLGHNMGRMKTETWKWADIESTLVQMGVtTRKADDCGKKWDNMYMQFKIVHKFMG 467 9***********77777777777888999*********99999799***************9877655 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MVAAAISYVV VFPRATCVSG RRDRDSQVRP LCFMADLCHR LPLLLLAAVL LLAVVVFHIC 60 ILDRVPGRNH RRRTTKATGK MEKVQTKRTM SVGAGGSSHQ RCSSAEGGRR PYDPTLYSHL 120 PSHEIPLPPS DDDSDEPRSS TAPLGSGLTQ DWMGSQLYRQ PSTPTYTDLL EGRTPFGYDG 180 GLVDLSFGLR SGSGQDVTHT VLVNPGSASN HTAPSVGPCG LPDTRGRGSG QSGDERGLIS 240 RGRAAVGTAG VRAEGTRTGG STTAGGAVHR EGDDGDGYAA EVARREVWDD YRRQSHQSST 300 SAITRGVAKI NVRADDTPGD CDGAGGEDLS AGDGGNDNDD NDGGEMEIRL LGKKRGGPRA 360 TSKSSEPRAG RRGKKTAGDA SACDGAKSRD FWTVEHMIAL VRAKRDQDLH LAGLGHNMGR 420 MKTETWKWAD IESTLVQMGV TTRKADDCGK KWDNMYMQFK IVHKFMGESG KPDFFTLAPR 480 ERKERGLDFW MDERVYSEMM AMSKGDHTIH PTNLADTGAA GGVQLPGRTG GRNESGGSDG 540 CGDGRDDDQG STWNLSFSGG AEGGCGKRKN VRQQTFDTIA DVMKDHGSLM ATTVDSASKR 600 QCSILTRQCD ILERELEVQK EHYVKADQAN LLMCNTLIEI AKAIRERS

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MVAAAISYVV VFPRATCVSG RRDRDSQVRP LCFMADLCHR LPLLLLAAVL LLAVVVFHIC  60
ILDRVPGRNH RRRTTKATGK MEKVQTKRTM SVGAGGSSHQ RCSSAEGGRR PYDPTLYSHL  120
PSHEIPLPPS DDDSDEPRSS TAPLGSGLTQ DWMGSQLYRQ PSTPTYTDLL EGRTPFGYDG  180
GLVDLSFGLR SGSGQDVTHT VLVNPGSASN HTAPSVGPCG LPDTRGRGSG QSGDERGLIS  240
RGRAAVGTAG VRAEGTRTGG STTAGGAVHR EGDDGDGYAA EVARREVWDD YRRQSHQSST  300
SAITRGVAKI NVRADDTPGD CDGAGGEDLS AGDGGNDNDD NDGGEMEIRL LGKKRGGPRA  360
TSKSSEPRAG RRGKKTAGDA SACDGAKSRD FWTVEHMIAL VRAKRDQDLH LAGLGHNMGR  420
MKTETWKWAD IESTLVQMGV TTRKADDCGK KWDNMYMQFK IVHKFMGESG KPDFFTLAPR  480
ERKERGLDFW MDERVYSEMM AMSKGDHTIH PTNLADTGAA GGVQLPGRTG GRNESGGSDG  540
CGDGRDDDQG STWNLSFSGG AEGGCGKRKN VRQQTFDTIA DVMKDHGSLM ATTVDSASKR  600
QCSILTRQCD ILERELEVQK EHYVKADQAN LLMCNTLIEI AKAIRERS