PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88389.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1100aa MW: 120761 Da PI: 7.6502

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27	1.2e-08	325	399	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + ++L++ +r ++ ++++r k k+ +We+ sk+m+ g + C +kw+nl + ykki++ ++ GBG88389.1 325 WSVEDQMLLVRCKReqdmhlaDLSHNYGRMKTKEWKWEDMSKRMANAGRLKDVDDCMKKWDNLFQNYKKIQRFQN 399 7888888888888855555556666677889**************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 1100 aa Download sequence
MRSGTSTCAG RQTEPLWAAQ AAMVKFQTEA WRVRRLLWWL SAYEGRASLS RACRNTDLQW 60 SRARAAAKVN FMADVRRRLP LLTVRAGGSA PDEGGEFTSL LHQGLRDDDG GGVDLRFGLY 120 SGGGREASRT FIIDGDRSAR GVEHGGSLHT EQSTLRRAAL VTGAVGPSPA GRQHGSTAPS 180 VDRLTPTWPA PPRVAGGPLR MGGARSLIMM LACTTPIESG VREEGTCRAP VCPRPTVDNI 240 TRGVSNMRAH SDGGEEDVGF GDDADEGMRE DVEAGDDDND VPIRPLGKMA GRGRGRGRGG 300 VRGRSVGRGG RGGVSDDAGK SPTYWSVEDQ MLLVRCKREQ DMHLADLSHN YGRMKTKEWK 360 WEDMSKRMAN AGRLKDVDDC MKKWDNLFQN YKKIQRFQNA SGRPDFFRLT NEERKEHNFK 420 FRMDRAMYNE IHAGMVGNHT IFPPNVADTG SPDGVQLPRR GAGGGKSVCS EAAGEGCPDD 480 PSSARESDNN VGSGAGGGKR KNARQQAFES ISDVMERHGA LMSSTIESSS KRQCSIFTRQ 540 CDILEQEVAV QKAHYAASDE TQRMMCQALL EIAAGKGRRH VSKAKRLRLD DASANAPRRG 600 ARGWAQAAEE VYDDDFMTED DQGEATTSAG REGARQRTLD QSTSKRMSTP PPEAQQLRVR 660 ETWKEKGAVV DLGGEDDEPL EKRRLRSATQ ATTMAVSTAR AAEDERPITG ALPCTPSQPR 720 QRNDGGDGVV PPVPAAKEEA AIPTTVREEG RGQNTNQRDG GEGASSRARK GVITKDLINR 780 ALLWVDDKCF WTTGEGRRLY NIVDETKEYF VAIASSLPPP ELPLSVVVPK SSTRVARIAN 840 QSHLQQAISR AAAVENIALR ILHGSVFKSR NRPRGYHLAF QYSLESVVTD IARAMWYGEE 900 WCNVVSAPIC AHMIDLNVDL PLWYAGANIE DRPEDDDMAA YQESTVISIA HSFRAAVQMG 960 THIDGDFISY ERLCRVADCF RLLLAASMWI MRMAGDDLRS HYEAFYFADL FVRPTLIASM 1020 HRSFDHRRSV IRAANVVTER LGKVKATLGV YLNYIPDWAP CDIGFAHDVT IXGPEDGKRL 1080 DWLGSGPADD DIKGEGKSDA

Sequence ? help Back to Top

Protein Sequence Length: 1100 aa Download sequence

MRSGTSTCAG RQTEPLWAAQ AAMVKFQTEA WRVRRLLWWL SAYEGRASLS RACRNTDLQW  60
SRARAAAKVN FMADVRRRLP LLTVRAGGSA PDEGGEFTSL LHQGLRDDDG GGVDLRFGLY  120
SGGGREASRT FIIDGDRSAR GVEHGGSLHT EQSTLRRAAL VTGAVGPSPA GRQHGSTAPS  180
VDRLTPTWPA PPRVAGGPLR MGGARSLIMM LACTTPIESG VREEGTCRAP VCPRPTVDNI  240
TRGVSNMRAH SDGGEEDVGF GDDADEGMRE DVEAGDDDND VPIRPLGKMA GRGRGRGRGG  300
VRGRSVGRGG RGGVSDDAGK SPTYWSVEDQ MLLVRCKREQ DMHLADLSHN YGRMKTKEWK  360
WEDMSKRMAN AGRLKDVDDC MKKWDNLFQN YKKIQRFQNA SGRPDFFRLT NEERKEHNFK  420
FRMDRAMYNE IHAGMVGNHT IFPPNVADTG SPDGVQLPRR GAGGGKSVCS EAAGEGCPDD  480
PSSARESDNN VGSGAGGGKR KNARQQAFES ISDVMERHGA LMSSTIESSS KRQCSIFTRQ  540
CDILEQEVAV QKAHYAASDE TQRMMCQALL EIAAGKGRRH VSKAKRLRLD DASANAPRRG  600
ARGWAQAAEE VYDDDFMTED DQGEATTSAG REGARQRTLD QSTSKRMSTP PPEAQQLRVR  660
ETWKEKGAVV DLGGEDDEPL EKRRLRSATQ ATTMAVSTAR AAEDERPITG ALPCTPSQPR  720
QRNDGGDGVV PPVPAAKEEA AIPTTVREEG RGQNTNQRDG GEGASSRARK GVITKDLINR  780
ALLWVDDKCF WTTGEGRRLY NIVDETKEYF VAIASSLPPP ELPLSVVVPK SSTRVARIAN  840
QSHLQQAISR AAAVENIALR ILHGSVFKSR NRPRGYHLAF QYSLESVVTD IARAMWYGEE  900
WCNVVSAPIC AHMIDLNVDL PLWYAGANIE DRPEDDDMAA YQESTVISIA HSFRAAVQMG  960
THIDGDFISY ERLCRVADCF RLLLAASMWI MRMAGDDLRS HYEAFYFADL FVRPTLIASM  1020
HRSFDHRRSV IRAANVVTER LGKVKATLGV YLNYIPDWAP CDIGFAHDVT IXGPEDGKRL  1080
DWLGSGPADD DIKGEGKSDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein