PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG89421.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1151aa MW: 126151 Da PI: 9.9137

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG89421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.2	3.7e-12	426	497	2	66
trihelix 2 WtkqevlaLiearremeerlrr.....gklkkplWe..evskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +l+ ++ k W+ +v+++++ g+ r+p++C +kw+nl +++kk+ + GBG89421.1 426 WSVEHIIALIRAKRDQDAHLQGmghayAQMKPREWKrnDVARRLKNVGVDRKPEKCGKKWDNLMQQFKKVHH 497 9************999999532233467777887336****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence
MSTPTVTVSG PVASPRCTPR CNSGFGFSRG GKPANGRQMR IFEAAQRVQK TTASVCRQAR 60 VAVCRTSQLR CRPCSLPSSA VAVVRRMADS FRKLPLLLLA IFLLVVVVVL HVCFVGSTPR 120 RRRRRTSPMK AVRTDSGQGS PRGGGEKVVS RRAVGSSSPT CRLSLGVGNS SLPPHLQPLP 180 DSSDEEEREG RARTVPLGSG STQEWSWTEL CGGSGGVHGQ SFTELLAPGL DGEEGHGGSN 240 LSSGLSTGRC GSRTRTACSS GGDERLPSLG ARKVVRCLCS PRLRCVLRPT WDVDVALSRR 300 GGGYLDDVID DRDGRLVWAE ERRKIREGRE EAIRRGVERL RMDRQAEEVE EPHAGLPSED 360 DEMTAQERQE TGKAVTPRHR RTTTGGGKGG KTKATSGNGR GRPKKAQAKA NDGEGDGDAE 420 EKRNFWSVEH IIALIRAKRD QDAHLQGMGH AYAQMKPREW KRNDVARRLK NVGVDRKPEK 480 CGKKWDNLMQ QFKKVHHFQS PSGGIDFFQL NGKARARHGF NFNMDRAVYD EIEGSSGFNE 540 TINPKNVADT GARGGVRLPS TTTADPEAVG GADAGAGGED EDEGSTRGSS QTSGSPHGFR 600 KRKSTRQQTF EAMTECMDKH VGXEVEADWV DAXERQEEDD DFEEVDKQTL VRKVKQRTGG 660 AIRIETGGVG AGEVAPDQQQ TPSSKRSEQA VGVASSSQVV VDQSTMRSPA PQPRGEAVQG 720 ASSMADVAKA GDXXXAGEBD EPLVMKLRGQ RPEAKAMEVA ARLWTDDIRF WNQTRGKEII 780 DIMHEAXVHL FDVATGVQPS AIRRSIXLPH SSIPQKKIED ASELRAVKER ALKVESIAKR 840 AIHGWIFKSD SRHKGYHLAY QYALNHAATD MARAMWALED WCSLVSPMAI QNTLELGMKL 900 PLWFVGATVV DRHQDDECAA YQEAIAQRLV RDFTNVVEAA QAMDSRRVSY ERLKSLAEAM 960 RYLLAAAAWI MRMVGDDARS HFDAWVFVQL TSKTTLLAAM DRHFDSRRHV LLAATVMTEK 1020 LGRPPPTFAP PPLYIPNWAS KCGVTFNHDA TLSSPMEQRR RIGSAQAPLR RKTRTTTILM 1080 APRAGDSGSG SGWTADEGGR SFVEGFSKRR GQGCVIRAHK DHDGGGKTKT KVKMVAVLHG 1140 LDRQNETPFF G

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence

MSTPTVTVSG PVASPRCTPR CNSGFGFSRG GKPANGRQMR IFEAAQRVQK TTASVCRQAR  60
VAVCRTSQLR CRPCSLPSSA VAVVRRMADS FRKLPLLLLA IFLLVVVVVL HVCFVGSTPR  120
RRRRRTSPMK AVRTDSGQGS PRGGGEKVVS RRAVGSSSPT CRLSLGVGNS SLPPHLQPLP  180
DSSDEEEREG RARTVPLGSG STQEWSWTEL CGGSGGVHGQ SFTELLAPGL DGEEGHGGSN  240
LSSGLSTGRC GSRTRTACSS GGDERLPSLG ARKVVRCLCS PRLRCVLRPT WDVDVALSRR  300
GGGYLDDVID DRDGRLVWAE ERRKIREGRE EAIRRGVERL RMDRQAEEVE EPHAGLPSED  360
DEMTAQERQE TGKAVTPRHR RTTTGGGKGG KTKATSGNGR GRPKKAQAKA NDGEGDGDAE  420
EKRNFWSVEH IIALIRAKRD QDAHLQGMGH AYAQMKPREW KRNDVARRLK NVGVDRKPEK  480
CGKKWDNLMQ QFKKVHHFQS PSGGIDFFQL NGKARARHGF NFNMDRAVYD EIEGSSGFNE  540
TINPKNVADT GARGGVRLPS TTTADPEAVG GADAGAGGED EDEGSTRGSS QTSGSPHGFR  600
KRKSTRQQTF EAMTECMDKH VGXEVEADWV DAXERQEEDD DFEEVDKQTL VRKVKQRTGG  660
AIRIETGGVG AGEVAPDQQQ TPSSKRSEQA VGVASSSQVV VDQSTMRSPA PQPRGEAVQG  720
ASSMADVAKA GDXXXAGEBD EPLVMKLRGQ RPEAKAMEVA ARLWTDDIRF WNQTRGKEII  780
DIMHEAXVHL FDVATGVQPS AIRRSIXLPH SSIPQKKIED ASELRAVKER ALKVESIAKR  840
AIHGWIFKSD SRHKGYHLAY QYALNHAATD MARAMWALED WCSLVSPMAI QNTLELGMKL  900
PLWFVGATVV DRHQDDECAA YQEAIAQRLV RDFTNVVEAA QAMDSRRVSY ERLKSLAEAM  960
RYLLAAAAWI MRMVGDDARS HFDAWVFVQL TSKTTLLAAM DRHFDSRRHV LLAATVMTEK  1020
LGRPPPTFAP PPLYIPNWAS KCGVTFNHDA TLSSPMEQRR RIGSAQAPLR RKTRTTTILM  1080
APRAGDSGSG SGWTADEGGR SFVEGFSKRR GQGCVIRAHK DHDGGGKTKT KVKMVAVLHG  1140
LDRQNETPFF G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	125	RRRRRR
2	120	126	RRRRRRT
3	121	127	RRRRRRT
4	399	407	GRGRPKKAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-08	Trihelix family protein