PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG89578.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 531aa MW: 55853 Da PI: 5.9172

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG89578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.1	5.3e-09	216	298	2	79
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W + +++Li a+ e++++g+ k+ W e+++ + + gf+++ +C+ +w+n+ y+++++ ++ s+++s + GBG89578.1 216 WAHLDTMTLICAKGeryvaraINSEDMGNGRTSKQAWVEIANTLTAAGFKKTWLECRTRWRNIWSTYRQVTTLHRG--SGAQSYW 298 8888899999888844444434455666788***************************************998887..4555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MLPAGRAFSA FQPFGADSVD AHQGGAEAFG GSAGAAMCVP VESGGDKGGA CGSQRGACGD 60 ACGRPCPQNP PGGAGPAGMQ ACGGGQDPAV GMQWTAIQSP VPSRHDRGGI ANTASRGQVD 120 CNIDLYMQDN DWGGNDILSG DTVLVHSPNR DNEADDENDG HGIGSQADEG TEPHGVHSTQ 180 EGCNGSQEPL SSQRETTQLD ADGSQGAART RKRGDWAHLD TMTLICAKGE RYVARAINSE 240 DMGNGRTSKQ AWVEIANTLT AAGFKKTWLE CRTRWRNIWS TYRQVTTLHR GSGAQSYWRI 300 TSAERNDKGF NFILRKDWFD LLEVFYWNDK SVHPSNCEDP GSRFEEGQSC PPGGASGGGA 360 ASPDSAPAEG APAAASDSAP TQGASAATSD IAPAQGAGNS DPPPSYKRAR TAQNARKKSF 420 KELGSWMQAQ TGALKHHTDT TLKCAELTVS AIDRQSSTAA AVQRDCAQLI AQKMEYGWKV 480 IADLVRESHL ARGNCTSRPA TGEFPPTDHG TATTSCSQGT EEFRGAARRA S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MLPAGRAFSA FQPFGADSVD AHQGGAEAFG GSAGAAMCVP VESGGDKGGA CGSQRGACGD  60
ACGRPCPQNP PGGAGPAGMQ ACGGGQDPAV GMQWTAIQSP VPSRHDRGGI ANTASRGQVD  120
CNIDLYMQDN DWGGNDILSG DTVLVHSPNR DNEADDENDG HGIGSQADEG TEPHGVHSTQ  180
EGCNGSQEPL SSQRETTQLD ADGSQGAART RKRGDWAHLD TMTLICAKGE RYVARAINSE  240
DMGNGRTSKQ AWVEIANTLT AAGFKKTWLE CRTRWRNIWS TYRQVTTLHR GSGAQSYWRI  300
TSAERNDKGF NFILRKDWFD LLEVFYWNDK SVHPSNCEDP GSRFEEGQSC PPGGASGGGA  360
ASPDSAPAEG APAAASDSAP TQGASAATSD IAPAQGAGNS DPPPSYKRAR TAQNARKKSF  420
KELGSWMQAQ TGALKHHTDT TLKCAELTVS AIDRQSSTAA AVQRDCAQLI AQKMEYGWKV  480
IADLVRESHL ARGNCTSRPA TGEFPPTDHG TATTSCSQGT EEFRGAARRA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	3e-06	Trihelix family protein