PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG89626.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1055aa MW: 113649 Da PI: 7.0146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG89626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.6	5.7e-12	326	401	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aLi+a+r m+++++r k ++ +W +v+ ++++ g+ r++ C +kw+nl +++kk+ + ++ GBG89626.1 326 WSVDDIIALIRAKRdqdahlqGMGHAYSRMKPREWKWLDVATRLKKVGVDREADWCGKKWDNLMQQFKKVHHFQGL 401 99**********444444444455557789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
MEGRKAISGS AGERGGRCSG HSPSNSPRPS ERSGHAHLPP NLQPLPDTDD EEGDDRRSRT 60 VPLGSGSTQE WTTTKLFGSR DGGKGQLYTE LLQQGLNDTD GDGGVNLSFG LGSGRLAAVS 120 RTVVVNPHPD NDGGDVTAIQ RSPRSPASLL EASGNNKDPP RQQFRSSSVC RGASARPQWM 180 QSPSPLSAGS SAGRHVGECR ETAPAVADVG DARDGREVWA EQRRLMRSVR EESITRGVQR 240 LRVGEDGHDG EEAVGDTHDP DWNDNDAEGG EDDADYILSS KQAAAMRGGG GKTKSCGSNG 300 RRGKRTADKG SDAEGDVDGE GGRHFWSVDD IIALIRAKRD QDAHLQGMGH AYSRMKPREW 360 KWLDVATRLK KVGVDREADW CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQL SGKDRMSKGF 420 SFNMDRAVYD KILGSTVKNH TTNPKNVADT GAQGGVRLPS TSSADLESVG HKDGGAEHDD 480 DDDGSTKGSS QTTGGAGGFG KRKSTTALSL SLPHAVAAVT RILAFVVQIV IVTAGASCAM 540 SSRASARGKA AANLSQQPPT REKKGRHMDS KKRKILEGAP THGGNVLDEE WVSDVATQEG 600 TDFEDSDDMP LQRKSSRRGS GGIRIDDAGE RRRAGGRPAP EDILDVGAAT AAREGAGNRA 660 PLPRMTPPTD AQEGVVRLRT LLTPRSRTAA DVALSGGPSQ AAGGVRAGGA AGGGGSHTAE 720 RNAREGMEAA AKLWVDDLRF WNEREGFAIV KLILEARGYL VVVAWGEQPP PIRCSIVLPH 780 NNIPQHKIAD ESELNAAKER ALKVQGIALR VIHGWVFKSQ NRRRGYHAAY QYALNHAATD 840 IARAMWMGEE WRYCVSPMVV HHTLDMDMKL PLWFVGADVE DRHEDDGLAA YQEASIQRLV 900 GAFTSAVIIA EAMDGGHVSH ERLNTMANAM RMMLAATMWL MWMAGDDHRA HYDAWVFVQL 960 TVKPTLVTSM HHCFDTRQHI VQAATVITDK LASPPITLID PPMYVPDWAS IGVKFSHNAT 1020 LSSPMEAKKV DWLGTGPPED EDGGKGDEQG SGGGR

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

MEGRKAISGS AGERGGRCSG HSPSNSPRPS ERSGHAHLPP NLQPLPDTDD EEGDDRRSRT  60
VPLGSGSTQE WTTTKLFGSR DGGKGQLYTE LLQQGLNDTD GDGGVNLSFG LGSGRLAAVS  120
RTVVVNPHPD NDGGDVTAIQ RSPRSPASLL EASGNNKDPP RQQFRSSSVC RGASARPQWM  180
QSPSPLSAGS SAGRHVGECR ETAPAVADVG DARDGREVWA EQRRLMRSVR EESITRGVQR  240
LRVGEDGHDG EEAVGDTHDP DWNDNDAEGG EDDADYILSS KQAAAMRGGG GKTKSCGSNG  300
RRGKRTADKG SDAEGDVDGE GGRHFWSVDD IIALIRAKRD QDAHLQGMGH AYSRMKPREW  360
KWLDVATRLK KVGVDREADW CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQL SGKDRMSKGF  420
SFNMDRAVYD KILGSTVKNH TTNPKNVADT GAQGGVRLPS TSSADLESVG HKDGGAEHDD  480
DDDGSTKGSS QTTGGAGGFG KRKSTTALSL SLPHAVAAVT RILAFVVQIV IVTAGASCAM  540
SSRASARGKA AANLSQQPPT REKKGRHMDS KKRKILEGAP THGGNVLDEE WVSDVATQEG  600
TDFEDSDDMP LQRKSSRRGS GGIRIDDAGE RRRAGGRPAP EDILDVGAAT AAREGAGNRA  660
PLPRMTPPTD AQEGVVRLRT LLTPRSRTAA DVALSGGPSQ AAGGVRAGGA AGGGGSHTAE  720
RNAREGMEAA AKLWVDDLRF WNEREGFAIV KLILEARGYL VVVAWGEQPP PIRCSIVLPH  780
NNIPQHKIAD ESELNAAKER ALKVQGIALR VIHGWVFKSQ NRRRGYHAAY QYALNHAATD  840
IARAMWMGEE WRYCVSPMVV HHTLDMDMKL PLWFVGADVE DRHEDDGLAA YQEASIQRLV  900
GAFTSAVIIA EAMDGGHVSH ERLNTMANAM RMMLAATMWL MWMAGDDHRA HYDAWVFVQL  960
TVKPTLVTSM HHCFDTRQHI VQAATVITDK LASPPITLID PPMYVPDWAS IGVKFSHNAT  1020
LSSPMEAKKV DWLGTGPPED EDGGKGDEQG SGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-09	Trihelix family protein