PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG89850.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1302aa MW: 143336 Da PI: 6.3965

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG89850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.5	4.1e-09	407	478	2	66
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ ++ aLi+a+r+ + +l+++ +++ +W +v +++ + g r + +C +kw+nl +++k+i + GBG89850.1 407 WSVDHMVALIRAKRDQDAQLQAAGhtfarmwSREWKWLDVRERLLKVGGDRPADKCGKKWDNLMQQFKNIHT 478 999****************8755677777***********************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1302 aa Download sequence
MADVLRKLPL VLLVVILLVV VVFVQVCILG RFPSRTRRKR GVRKSVAMDG RRPNLATLSD 60 TYPSHRPAIC TGVDRRAAGL STYEGLPPHM QPLPDSDEGE ADMDVSNTVP LGSGSTQEWT 120 GSKLFDGRGA KYRQSFTSLL HEGAQEKERL PPVDLTFGRR SGNPSSATRT VLVNPHPDDD 180 AGQVTLVGRG TRGGSARQET SEKTRERPXD DDAGQVTLVG RGTRGGSARQ ETSEKTRERP 240 RVQATSGPSI PRTTAGHPEW MNPPPAFSRG RDTVPRPLER GVSAEELPFE GACGDGRRVW 300 KESRQELRRQ QEESITQGVQ RLHVGERAGQ ADAVGGGGDV WTDGDEVECD AEEDDSSDVF 360 PLRAPNMGGR GGRGRASTNA GRRRKRPSAA SADAEGEGDG EGGRNFWSVD HMVALIRAKR 420 DQDAQLQAAG HTFARMWSRE WKWLDVRERL LKVGGDRPAD KCGKKWDNLM QQFKNIHTFM 480 GMSGKEDFFQ LTSQQRAEKE FSFNMDRAVY EEIKGAKERS HTISPSNVAD TGGAGGVQLP 540 SAQSATPESV GDGDAAGDGN DEDDNSARGG QTTSSRSDSS SRTAFVATIA QSRRHLHVAT 600 PFLFAQCVSR RHLSRQTSSS RRDSCSRTVR LAAIYLARRH LHVGAPVRAL LVSPPSILPD 660 VISTLGLLFA HCVCRRHLSR QTSSPRWDSY SRSVCLAAIA LAKRHLHAGT PVRTLCVSSP 720 SLSPDAVFAR RRIHAWTPPA QAFPRRHRSR SSFFSSSLSV FSAMTNTRSS GKWKRESDSQ 780 KTEVVGVVKR GRHQAKKPKA SSGGALVIGR SAREEWVFDE ASSGQDDDFE SEADTFHGRK 840 GTLRHVSNAR MVSGEEGVDG GKMGVTGLRE ARVRRPATWE AVLLPGRSVA SRRPLPCAAS 900 CRRRTCRPPR TQRRSGNMAA LEAKAKLCVD DLRFWNETEG HGMFKIIHET RLHLIAVAKG 960 VKPSEIRKSV VLPNATIPQQ KLEDSSELGA AKERASRVQT VALRIIHGWI FKSPNRARGY 1020 HCSYDYVLNH VATDLTRAIW FGEDWRVCVS PTVVHNTLEL HMKFPIWYIG GVIHDRHEDD 1080 EMASYQESTT QRLVGAFTNA VDTGEGVDGG RISYERLRNV ADCMRLLLSA AMWIVRMAGD 1140 NLRSHYEASH LVELIAKPTL IASLHRSFDA RRHVLQCVNA VTEKMGKPPM TLVDPPALWT 1200 TTEKMGKPPA AAADDDDDVD DEDVDDDDDN GDDDDDGDDD DDGDDNDDDV DDVHDDADDR 1260 DADDRDADDR DADDRDDDGD DDDGDDDDGD DDDDDDDDDV HN

Sequence ? help Back to Top

Protein Sequence Length: 1302 aa Download sequence

MADVLRKLPL VLLVVILLVV VVFVQVCILG RFPSRTRRKR GVRKSVAMDG RRPNLATLSD  60
TYPSHRPAIC TGVDRRAAGL STYEGLPPHM QPLPDSDEGE ADMDVSNTVP LGSGSTQEWT  120
GSKLFDGRGA KYRQSFTSLL HEGAQEKERL PPVDLTFGRR SGNPSSATRT VLVNPHPDDD  180
AGQVTLVGRG TRGGSARQET SEKTRERPXD DDAGQVTLVG RGTRGGSARQ ETSEKTRERP  240
RVQATSGPSI PRTTAGHPEW MNPPPAFSRG RDTVPRPLER GVSAEELPFE GACGDGRRVW  300
KESRQELRRQ QEESITQGVQ RLHVGERAGQ ADAVGGGGDV WTDGDEVECD AEEDDSSDVF  360
PLRAPNMGGR GGRGRASTNA GRRRKRPSAA SADAEGEGDG EGGRNFWSVD HMVALIRAKR  420
DQDAQLQAAG HTFARMWSRE WKWLDVRERL LKVGGDRPAD KCGKKWDNLM QQFKNIHTFM  480
GMSGKEDFFQ LTSQQRAEKE FSFNMDRAVY EEIKGAKERS HTISPSNVAD TGGAGGVQLP  540
SAQSATPESV GDGDAAGDGN DEDDNSARGG QTTSSRSDSS SRTAFVATIA QSRRHLHVAT  600
PFLFAQCVSR RHLSRQTSSS RRDSCSRTVR LAAIYLARRH LHVGAPVRAL LVSPPSILPD  660
VISTLGLLFA HCVCRRHLSR QTSSPRWDSY SRSVCLAAIA LAKRHLHAGT PVRTLCVSSP  720
SLSPDAVFAR RRIHAWTPPA QAFPRRHRSR SSFFSSSLSV FSAMTNTRSS GKWKRESDSQ  780
KTEVVGVVKR GRHQAKKPKA SSGGALVIGR SAREEWVFDE ASSGQDDDFE SEADTFHGRK  840
GTLRHVSNAR MVSGEEGVDG GKMGVTGLRE ARVRRPATWE AVLLPGRSVA SRRPLPCAAS  900
CRRRTCRPPR TQRRSGNMAA LEAKAKLCVD DLRFWNETEG HGMFKIIHET RLHLIAVAKG  960
VKPSEIRKSV VLPNATIPQQ KLEDSSELGA AKERASRVQT VALRIIHGWI FKSPNRARGY  1020
HCSYDYVLNH VATDLTRAIW FGEDWRVCVS PTVVHNTLEL HMKFPIWYIG GVIHDRHEDD  1080
EMASYQESTT QRLVGAFTNA VDTGEGVDGG RISYERLRNV ADCMRLLLSA AMWIVRMAGD  1140
NLRSHYEASH LVELIAKPTL IASLHRSFDA RRHVLQCVNA VTEKMGKPPM TLVDPPALWT  1200
TTEKMGKPPA AAADDDDDVD DEDVDDDDDN GDDDDDGDDD DDGDDNDDDV DDVHDDADDR  1260
DADDRDADDR DADDRDDDGD DDDGDDDDGD DDDDDDDDDV HN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein