PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG89936.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 654aa MW: 71075.8 Da PI: 6.6808

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG89936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.4	3.7e-08	441	511	2	65
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+ + ++L++ +r ++++++r + k+ +W+++ k+m+ g + + C +kw+nl + ykki+ GBG89936.1 441 WSPEDQMLLVRCKRehemhlvGLGHNYGRMRTKEWKWDDIVKRMANAGRPKDADDCMNKWDNLFQNYKKIQ 511 7788888888888844444444556666889**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MADMQRRSHV LVLAVVVFLH VCLLCRLWKQ RRKWRASTKR KAGERPMAGM QARAVLAAGQ 60 GGRRPATAEP PRLYEPSMYT HLESWETPLP PSDEEPETEE LPTLPLTSRS TQLLSQTVRA 120 GGSASNEGGE FTSLLHQGLG DDDDGGLDLR FGLCSGGARE ASRTFIIDVD PSPRGLQHAG 180 GEHTEQSILR GGASVTGGVK PSPAAQQHGS TAPSADRLAS TWPANTGVAV GSLRIGDARP 240 SMPNRTTSTQ PDLRDKGAHI PPVRPGPTVE NITRGVPNMR AHNDGGDDDG GGDDDADEGF 300 REVVEAWDDD DDIPIPVSYT HLDVYKRQTS TQPDLRDKGA HIPPVRPGPT VENITRGVPN 360 MRAHNDGGDD DGGGDDDADE GFREVVEAWD DDDDIPIRPL GKTGGRGKGR SRGAVRANGR 420 SVGCGGRGGV SDGGGKSATY WSPEDQMLLV RCKREHEMHL VGLGHNYGRM RTKEWKWDDI 480 VKRMANAGRP KDADDCMNKW DNLFQNYKKI QMFHNVSGQT NFFRLSNEER KEHNFKFRME 540 RVLYNKIHAG MLGNHTIFPP NVADTGSPDG VQLPRRGAVG GESVFSEAGG YGCPEERSSA 600 RVSDNNAGSG VGGGKRKNAR QQVLESIADV MDRHGELMST TINSFSKRQC SPGW

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MADMQRRSHV LVLAVVVFLH VCLLCRLWKQ RRKWRASTKR KAGERPMAGM QARAVLAAGQ  60
GGRRPATAEP PRLYEPSMYT HLESWETPLP PSDEEPETEE LPTLPLTSRS TQLLSQTVRA  120
GGSASNEGGE FTSLLHQGLG DDDDGGLDLR FGLCSGGARE ASRTFIIDVD PSPRGLQHAG  180
GEHTEQSILR GGASVTGGVK PSPAAQQHGS TAPSADRLAS TWPANTGVAV GSLRIGDARP  240
SMPNRTTSTQ PDLRDKGAHI PPVRPGPTVE NITRGVPNMR AHNDGGDDDG GGDDDADEGF  300
REVVEAWDDD DDIPIPVSYT HLDVYKRQTS TQPDLRDKGA HIPPVRPGPT VENITRGVPN  360
MRAHNDGGDD DGGGDDDADE GFREVVEAWD DDDDIPIRPL GKTGGRGKGR SRGAVRANGR  420
SVGCGGRGGV SDGGGKSATY WSPEDQMLLV RCKREHEMHL VGLGHNYGRM RTKEWKWDDI  480
VKRMANAGRP KDADDCMNKW DNLFQNYKKI QMFHNVSGQT NFFRLSNEER KEHNFKFRME  540
RVLYNKIHAG MLGNHTIFPP NVADTGSPDG VQLPRRGAVG GESVFSEAGG YGCPEERSSA  600
RVSDNNAGSG VGGGKRKNAR QQVLESIADV MDRHGELMST TINSFSKRQC SPGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein