PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90101.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1017aa MW: 111377 Da PI: 8.0638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.2	8.7e-13	373	448	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aLi+a+r+ + +l+ r k ++ +W +v+ +++ g+ r++ +C +kw+nl +++kk+ + ++ GBG90101.1 373 WSVDDIIALIRAKRDQDAHLQgmghayaRMKPREWKWLDVATRLKNVGVDREADRCGKKWDNLMQQFKKVHHFQGL 448 99**********777766643333336789999********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence
MADVFRRLPL LLLVVLLLLL LVVFHVCILG GLPRRGRRRR CVKNNDRMEG RKAISGSAGE 60 RGGGWSGHSP SNSPRPSERS GHAHLPPHLQ PLPDTDDEEG DDRRSRTVPL GSGSTKEWAA 120 TELFGSRDGG KGQSYTELLQ QGLSDTDGDG GVNLSFGLGS GRSAVVSRTV VVNPHPDDDG 180 GDVTAVQRSP RSPAPLREAS ENNNDPPRQQ FRSPSVCRGA SARPQWMQSP SPLSASSSAG 240 HRVGECRETA PAVADVGDAH DGREVWGEQR RLMRSVREES ITRGVQRLRV GEDGHNGEEA 300 GADVHDPDWN DNGVEGWEDD AANISPSKQA TAIGGRGGKT KSCGGNGRRG KRTTGKGSDA 360 EGDVDGEGGR HFWSVDDIIA LIRAKRDQDA HLQGMGHAYA RMKPREWKWL DVATRLKNVG 420 VDREADRCGK KWDNLMQQFK KVHHFQGLSG KQDFFQLSGK DRMSKGFSFN MDCAVYDEIL 480 GSTAKNHTIN PRNVADTGAQ GSVRLSSASS VDPESVGDGD GGAEHDDDDD GSTKGFSQTT 540 GGAGGFGKRK STRQQTLEAM TECMEKHGAL MASTMESNNK RHCSIAIRQC EALEAEIEAQ 600 KKHYAASDEI LASFVQIVIV TASASCAMSS RASACGKAAA NLSQQPATRE KKGRHMASKK 660 RKILEGAPAH GGYVLDEEWV PEDVATQEGT DFENSDDMPL QRKSSRRGSG GIRIDDVGER 720 RRAGGWPAPE DVSTLTPRRQ PERAGEIARH CHRNTREGME AAAKLWVDDL RFWNEREGFA 780 IVKLIAEARG YLVAVARGEP PPPIRRSIVL PHNSIPQHKI ADESELNATK ERALKVQGIA 840 LRVIHGWVFK SQNRQRGYHA AYQYTLNHAA TDIARAMWMG EDWRYCVSPM VVHHTLDMDM 900 KLPLWFVGAD VEDRHEDNGL AAYQEASIQR LVGAFTSAVI IAEATDGGRV SHKRLKTMAD 960 AMWMMLATTM WLMRMAGDDH RAHCDAWVFV QLWRSRRSSH PCIAASPRVG TSCKLRP

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence

MADVFRRLPL LLLVVLLLLL LVVFHVCILG GLPRRGRRRR CVKNNDRMEG RKAISGSAGE  60
RGGGWSGHSP SNSPRPSERS GHAHLPPHLQ PLPDTDDEEG DDRRSRTVPL GSGSTKEWAA  120
TELFGSRDGG KGQSYTELLQ QGLSDTDGDG GVNLSFGLGS GRSAVVSRTV VVNPHPDDDG  180
GDVTAVQRSP RSPAPLREAS ENNNDPPRQQ FRSPSVCRGA SARPQWMQSP SPLSASSSAG  240
HRVGECRETA PAVADVGDAH DGREVWGEQR RLMRSVREES ITRGVQRLRV GEDGHNGEEA  300
GADVHDPDWN DNGVEGWEDD AANISPSKQA TAIGGRGGKT KSCGGNGRRG KRTTGKGSDA  360
EGDVDGEGGR HFWSVDDIIA LIRAKRDQDA HLQGMGHAYA RMKPREWKWL DVATRLKNVG  420
VDREADRCGK KWDNLMQQFK KVHHFQGLSG KQDFFQLSGK DRMSKGFSFN MDCAVYDEIL  480
GSTAKNHTIN PRNVADTGAQ GSVRLSSASS VDPESVGDGD GGAEHDDDDD GSTKGFSQTT  540
GGAGGFGKRK STRQQTLEAM TECMEKHGAL MASTMESNNK RHCSIAIRQC EALEAEIEAQ  600
KKHYAASDEI LASFVQIVIV TASASCAMSS RASACGKAAA NLSQQPATRE KKGRHMASKK  660
RKILEGAPAH GGYVLDEEWV PEDVATQEGT DFENSDDMPL QRKSSRRGSG GIRIDDVGER  720
RRAGGWPAPE DVSTLTPRRQ PERAGEIARH CHRNTREGME AAAKLWVDDL RFWNEREGFA  780
IVKLIAEARG YLVAVARGEP PPPIRRSIVL PHNSIPQHKI ADESELNATK ERALKVQGIA  840
LRVIHGWVFK SQNRQRGYHA AYQYTLNHAA TDIARAMWMG EDWRYCVSPM VVHHTLDMDM  900
KLPLWFVGAD VEDRHEDNGL AAYQEASIQR LVGAFTSAVI IAEATDGGRV SHKRLKTMAD  960
AMWMMLATTM WLMRMAGDDH RAHCDAWVFV QLWRSRRSSH PCIAASPRVG TSCKLRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein