PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90400.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 936aa MW: 103172 Da PI: 6.4532

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.6e-09	102	152	18	68
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 +++++r + k+ +W+ ++k+m g r ++ C +kw+nl + ykki++ GBG90400.1 102 GHNYGRMRTKEWKWDNIAKRMGNVGGPRDANDCMKKWDNLFQNYKKIQRFL 152 456678899*************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence
MRAHIDGGDD DGGGGDDADE RLMEDVEAGD DDDDIRIRPP RKTGGRGRGR SRGVVRGRSV 60 GRGGKGGASD DGGKSATYRS PEDQMLLVRC KREQDMHLAG LGHNYGRMRT KEWKWDNIAK 120 RMGNVGGPRD ANDCMKKWDN LFQNYKKIQR FLNASGQPDF FRLSNEERKE HNFKFRMERV 180 LYNEIHAGMA RVGGGESVGS ESGGEGFPEG RSSVRDSDNN AGSGVGGGKQ KNAREQALES 240 IADVMDRHGE LMSSTIESSS KRQCGIFTRQ CDILEQEVAV QKVHYAASDE TQRMMCHALM 300 EIVATIRGRS PIGALSPGSS SFCPPRVRRR LLPAEDSSSA SYEYSSASRR SSTGDISLAR 360 SAGLQTAVDE AFPAHPIGPP SSSAEVTMKH VYVREHRGKK RDEVPDDSQG QGRGRRHVPK 420 TKRVCLDDAS ARVPPCGAQG WAAAAGGDYD EDFTTEEEQA EATASAVWES GRQRSSDHSA 480 PKRMLTPPPE AQQLRARERR TEKAAIVDLG GDDDEPLEKR HLRTRTIATP PTTVVARAAV 540 DERPVMGRLP ATPSQPRQRN PGDDGGSALW PPVATAREEA AVVATTREDA RGEKKTDREG 600 CEAGSSRVQR GVMTKDLIDR AVLWVDDKAF WTTGEGRRLH ETRECFVAIA SGLPPPAIPR 660 SVVQPKSSTR VARITDQSQL QQAISRAVEV ENIALRILHD WVFKSGNRPR GYNVAFQYSL 720 ESVATNIARA MWYIEEWCNV VSPAVCAHMI DLSMDLPLWF ADANIEDRSD DDDMAAHQES 780 TVICVAHAFR VAVQMGALID GDFISYDHLC RVADCFRLLL AASMWIMRIA GDDPRSHYEA 840 FYFVSLVAKP TLVAAMHRSF DHRRFVVRAV NVVTERLGKA NATLGEYPDY IPQWAPYGIG 900 FRHDVSTTGP EDAKKLDWLG SGPPDDDNND DEKDDA

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence

MRAHIDGGDD DGGGGDDADE RLMEDVEAGD DDDDIRIRPP RKTGGRGRGR SRGVVRGRSV  60
GRGGKGGASD DGGKSATYRS PEDQMLLVRC KREQDMHLAG LGHNYGRMRT KEWKWDNIAK  120
RMGNVGGPRD ANDCMKKWDN LFQNYKKIQR FLNASGQPDF FRLSNEERKE HNFKFRMERV  180
LYNEIHAGMA RVGGGESVGS ESGGEGFPEG RSSVRDSDNN AGSGVGGGKQ KNAREQALES  240
IADVMDRHGE LMSSTIESSS KRQCGIFTRQ CDILEQEVAV QKVHYAASDE TQRMMCHALM  300
EIVATIRGRS PIGALSPGSS SFCPPRVRRR LLPAEDSSSA SYEYSSASRR SSTGDISLAR  360
SAGLQTAVDE AFPAHPIGPP SSSAEVTMKH VYVREHRGKK RDEVPDDSQG QGRGRRHVPK  420
TKRVCLDDAS ARVPPCGAQG WAAAAGGDYD EDFTTEEEQA EATASAVWES GRQRSSDHSA  480
PKRMLTPPPE AQQLRARERR TEKAAIVDLG GDDDEPLEKR HLRTRTIATP PTTVVARAAV  540
DERPVMGRLP ATPSQPRQRN PGDDGGSALW PPVATAREEA AVVATTREDA RGEKKTDREG  600
CEAGSSRVQR GVMTKDLIDR AVLWVDDKAF WTTGEGRRLH ETRECFVAIA SGLPPPAIPR  660
SVVQPKSSTR VARITDQSQL QQAISRAVEV ENIALRILHD WVFKSGNRPR GYNVAFQYSL  720
ESVATNIARA MWYIEEWCNV VSPAVCAHMI DLSMDLPLWF ADANIEDRSD DDDMAAHQES  780
TVICVAHAFR VAVQMGALID GDFISYDHLC RVADCFRLLL AASMWIMRIA GDDPRSHYEA  840
FYFVSLVAKP TLVAAMHRSF DHRRFVVRAV NVVTERLGKA NATLGEYPDY IPQWAPYGIG  900
FRHDVSTTGP EDAKKLDWLG SGPPDDDNND DEKDDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein