PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90705.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1163aa MW: 126643 Da PI: 4.7364

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.1	5.5e-09	375	447	2	67
trihelix 2 WtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ ++ aLi+a+r+ + +l+++ ++++ +W v +++ + + r +C +kw+nl +++kki + GBG90705.1 375 WSVDHMVALIRAKRDQDAQLQAAghafarmRSREWKWLNVRERLLKVCVDRPTDKCGKKWDNLMQQFKKIHTF 447 999*********9999999753333333699**********************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
MADVLRKLPL VLFVVILLVV VVFVQVCILG RLPSRTRRKR GVRKSVAMDG RRPNLATLSD 60 TYPSHRPAIC TGVDRRAEGP STYEGLPPHM QPLPDSDEGE ADVDVSNTVP LGSGSTQEWT 120 GTQLFDGRGA KYRQSFTSLL HEGAQEEEHL PLVDLTFGLR SGSPSSVTRT VLVNPHPDDD 180 AGQVTLVGRG TRGGSARQET SEKTRERPQV QATSGPSIPR TTAGRPEWMN PPPAFSRGHD 240 TVPRPVERGV SAEDFPFEGT RGDGRWVWKE SRQELRRQQE ESITQGVQRL RVGERAGQAD 300 AVGGGGDVWT DGNEVECDTE KDDSGDVFPL HAPNMGGRGG RGRASTNAGQ RRKRPSAASA 360 DAEGEGDGLG GRNFWSVDHM VALIRAKRDQ DAQLQAAGHA FARMRSREWK WLNVRERLLK 420 VCVDRPTDKC GKKWDNLMQQ FKKIHTFMGM SGKKDFFQLT SQQRAEKGFS FNMDRAVYEE 480 IKGAKERSHT ISPSNVADTG GAGGDQLPSA QSATPESVGD GDAAGDGNDE DDSSARGASQ 540 TTGSPARFRK RKNVRQQTFE ALSECMEKHG ALMASTMESA SMRQYEAMES ASKRERDSQK 600 TEAAGVVKRG RHQAKKPKAS SGGALVIGRS AWEEWVDEAS SGQDDDFESE ADTFHARKGT 660 LRDVSNARMV SGEEGVDGGK DGGHGVARGK GEATGDVGGG VAAREVCSQP TTLAMRGAVP 720 SKDVQAAQDV VRGQLATRIP AKEAATVGAV IGTSTAGTGG GGGDGRDDAD DDDPLINRQR 780 RSGNMTALEA KAKLWVDDLR FWNETEGHGI FKITQETRLH LIVIAKGVKP PGIRKSVVLP 840 NATIPQQKLE DSSELGAAKE RASRVQTIAL RIIHGWIFKS PNRARGYHCS YGYVLNHVAT 900 DLARAIWFGE DWRVCVSPAV VHNTLELHMK LPIWYVGGVI HDRHEDDEMA LYQESTMQRL 960 VRAFTNAVDT GEGVDDGRIS YERLRNVADC MRLLLSAAMW IMWMAGDNLR SHYEASHLVE 1020 LIAKSTLIAS LHRSFDARRH VLQCVNAVTE KMGKPPMTLV DPPVYIPDWA LWTTTEKMGK 1080 PAAPAADDDD DVDDEDVDDD GDDGDDGDDG DDGDGDDDGD DGDDYDDDGD GDDDDEDVDD 1140 DDDDGDDDDG DDDDDDDDDD VHD

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

MADVLRKLPL VLFVVILLVV VVFVQVCILG RLPSRTRRKR GVRKSVAMDG RRPNLATLSD  60
TYPSHRPAIC TGVDRRAEGP STYEGLPPHM QPLPDSDEGE ADVDVSNTVP LGSGSTQEWT  120
GTQLFDGRGA KYRQSFTSLL HEGAQEEEHL PLVDLTFGLR SGSPSSVTRT VLVNPHPDDD  180
AGQVTLVGRG TRGGSARQET SEKTRERPQV QATSGPSIPR TTAGRPEWMN PPPAFSRGHD  240
TVPRPVERGV SAEDFPFEGT RGDGRWVWKE SRQELRRQQE ESITQGVQRL RVGERAGQAD  300
AVGGGGDVWT DGNEVECDTE KDDSGDVFPL HAPNMGGRGG RGRASTNAGQ RRKRPSAASA  360
DAEGEGDGLG GRNFWSVDHM VALIRAKRDQ DAQLQAAGHA FARMRSREWK WLNVRERLLK  420
VCVDRPTDKC GKKWDNLMQQ FKKIHTFMGM SGKKDFFQLT SQQRAEKGFS FNMDRAVYEE  480
IKGAKERSHT ISPSNVADTG GAGGDQLPSA QSATPESVGD GDAAGDGNDE DDSSARGASQ  540
TTGSPARFRK RKNVRQQTFE ALSECMEKHG ALMASTMESA SMRQYEAMES ASKRERDSQK  600
TEAAGVVKRG RHQAKKPKAS SGGALVIGRS AWEEWVDEAS SGQDDDFESE ADTFHARKGT  660
LRDVSNARMV SGEEGVDGGK DGGHGVARGK GEATGDVGGG VAAREVCSQP TTLAMRGAVP  720
SKDVQAAQDV VRGQLATRIP AKEAATVGAV IGTSTAGTGG GGGDGRDDAD DDDPLINRQR  780
RSGNMTALEA KAKLWVDDLR FWNETEGHGI FKITQETRLH LIVIAKGVKP PGIRKSVVLP  840
NATIPQQKLE DSSELGAAKE RASRVQTIAL RIIHGWIFKS PNRARGYHCS YGYVLNHVAT  900
DLARAIWFGE DWRVCVSPAV VHNTLELHMK LPIWYVGGVI HDRHEDDEMA LYQESTMQRL  960
VRAFTNAVDT GEGVDDGRIS YERLRNVADC MRLLLSAAMW IMWMAGDNLR SHYEASHLVE  1020
LIAKSTLIAS LHRSFDARRH VLQCVNAVTE KMGKPPMTLV DPPVYIPDWA LWTTTEKMGK  1080
PAAPAADDDD DVDDEDVDDD GDDGDDGDDG DDGDGDDDGD DGDDYDDDGD GDDDDEDVDD  1140
DDDDGDDDDG DDDDDDDDDD VHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-07	Trihelix family protein