PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90767.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

GATA

Protein Properties

Length: 1707aa MW: 185344 Da PI: 7.1677

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.3e-19	1335	1369	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt kTplWR+gp+g+k+LCnaCG++++k+++ GBG90767.1 1335 CVECGTMKTPLWRNGPRGPKSLCNACGIRFKKERK 1369 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1707 aa Download sequence
MTLLTRSQTA GMDQKANETG EAYEARLAAI MTESKQRAEA SAAARKTREA EAERLRQITK 60 DQRQKHAAAA AKDADEERVR RREILFREET ALHAQARDWR QEAENGDSVD YGTRIALLLN 120 SVTDLLATCM AQQEDIHSLD HANQALTKRI QQLEQRPVAT SSAGPSDLVD RVNILEIDVG 180 TLKTETQRLD QQATCAYERT DEIGLCFLHT VAAAKSQPTD LSSDPRVVRL LDEFADIFES 240 PTGVVPDRPI SQEVILEAGV VLPKGCIYRM SEEQLTVLRA ELDDLLDKGW IRPSSSPYGA 300 PVLFVQKKNK DLRLCIDYRK LNAQTVKNAG PLPRIGDLLE RLGDAEFFSK LDLKSGYHQI 360 SIRPQDRYKT AFKTWCGHFE WVVMPFGLTN APTTFRAAMT NEFRAMLDWF VLVFLIYSRT 420 LEEHLEHLRR VLETLRRAKY KAIRDKCKFV RQELEYLGHF VTPQGISPLS DKIQAIQDWP 480 EPRNITDVRS FLGLAGYYQR FIKGYSKITA HLSKLQCEDR PFDFGTDVRE SFLALKAALL 540 SAEVLRIYDR LLPTRVTTDA SGYGIGHGVA STEEKGEALR LGADIPEATG SSSEARRQQA 600 LVVQGGSGGR EPANAECGFA MASNGQREKG FEPSTSAAVC SGANSRVQNV IESWGALSMI 660 VEAKEGGGHG HGYEQKDGEY EREEDKRQCG KEEQAISRDG VTASDSSSFS RDVSGLSKYA 720 GSAFASCPQQ QLHAYNTAQQ HLRVGDLCHI HEGSNSCHEP VTAKDDQPTL DRILLNQHEM 780 HASQPRSPQP KRCRRASDQS LPARNGPVAT DSLTTQAGLV EEGRADEREI SRGNERREVG 840 PETTAVVSMV EAVAGNKDNG WDNGNVGFVN AWDAKQRMNC PKAGEEEMGK GATKDNIYEN 900 KSAARGSGSG NRDESDAVDM STVDDKGTGY GGSNEVQWTA EMTATVDGTA TSAIRPEVGL 960 VSWKGHGDRS KALTRASAPC PAVGSKRAYM RRGTNSDMHD RSTKNSKFLN AKAQRGRKEG 1020 SAKMAEQVDR RRAAAAAEGE SGQVSSGSGL GMGSGLKPNG RKVCTGRGGA CLAALRVHAT 1080 GGGLGMVVGV SLQQLSRSSQ RNVGLATRHF GHGSPNRTVK QTKKKLAASS SPPQPLAAAS 1140 APKRQGLNSI EGKKGVRKTS SVRQGWRRES AQRVLKKRIA MQVGREEKRR RGGGLLRNQV 1200 GHGRESSSGG TSPSPNLSKN SDDDDDEEEE DEEDEEDEEE EYNDDDNYEE EDEEDEEEEE 1260 EEECPGKRLA WAVRKRNNHD SSGKAEVATS AEQHLDRRDL GRGGLVNATH CGEKVGRRNR 1320 AEEPVGTKPG SARVCVECGT MKTPLWRNGP RGPKSLCNAC GIRFKKERKA LALAEAQAQA 1380 QAQANAEGNE QQENSSRGGK LVSSAPCRKG KTTVGSAVKS KKHLHLKNQK RKTAGETAAS 1440 VTDASDGTIA TTVSMEAVKA DVNAAPTEGC QCSSRQHSPC PFASDPPPSA SLQTQTTSDP 1500 PPVSLPTQTG HAHHKMTNYS SQCHVADAPD KAVSSAKLDA NKEEGNGNAT GIGAQDDGHG 1560 GDGHSAIRGG EMVAECGDRV GSSADSSVTL QGPPAMVSGP LKRKWKRMMG RSDPAVHESM 1620 QIQRVSIAGS GHSRCVELPV NWVAQGKKKV RERNGMAAIM DGMPMDDQHG EGKNNLLLEM 1680 EFGGCGGTAD EVQGAILLMT LFKGCPA

Sequence ? help Back to Top

Protein Sequence Length: 1707 aa Download sequence

MTLLTRSQTA GMDQKANETG EAYEARLAAI MTESKQRAEA SAAARKTREA EAERLRQITK  60
DQRQKHAAAA AKDADEERVR RREILFREET ALHAQARDWR QEAENGDSVD YGTRIALLLN  120
SVTDLLATCM AQQEDIHSLD HANQALTKRI QQLEQRPVAT SSAGPSDLVD RVNILEIDVG  180
TLKTETQRLD QQATCAYERT DEIGLCFLHT VAAAKSQPTD LSSDPRVVRL LDEFADIFES  240
PTGVVPDRPI SQEVILEAGV VLPKGCIYRM SEEQLTVLRA ELDDLLDKGW IRPSSSPYGA  300
PVLFVQKKNK DLRLCIDYRK LNAQTVKNAG PLPRIGDLLE RLGDAEFFSK LDLKSGYHQI  360
SIRPQDRYKT AFKTWCGHFE WVVMPFGLTN APTTFRAAMT NEFRAMLDWF VLVFLIYSRT  420
LEEHLEHLRR VLETLRRAKY KAIRDKCKFV RQELEYLGHF VTPQGISPLS DKIQAIQDWP  480
EPRNITDVRS FLGLAGYYQR FIKGYSKITA HLSKLQCEDR PFDFGTDVRE SFLALKAALL  540
SAEVLRIYDR LLPTRVTTDA SGYGIGHGVA STEEKGEALR LGADIPEATG SSSEARRQQA  600
LVVQGGSGGR EPANAECGFA MASNGQREKG FEPSTSAAVC SGANSRVQNV IESWGALSMI  660
VEAKEGGGHG HGYEQKDGEY EREEDKRQCG KEEQAISRDG VTASDSSSFS RDVSGLSKYA  720
GSAFASCPQQ QLHAYNTAQQ HLRVGDLCHI HEGSNSCHEP VTAKDDQPTL DRILLNQHEM  780
HASQPRSPQP KRCRRASDQS LPARNGPVAT DSLTTQAGLV EEGRADEREI SRGNERREVG  840
PETTAVVSMV EAVAGNKDNG WDNGNVGFVN AWDAKQRMNC PKAGEEEMGK GATKDNIYEN  900
KSAARGSGSG NRDESDAVDM STVDDKGTGY GGSNEVQWTA EMTATVDGTA TSAIRPEVGL  960
VSWKGHGDRS KALTRASAPC PAVGSKRAYM RRGTNSDMHD RSTKNSKFLN AKAQRGRKEG  1020
SAKMAEQVDR RRAAAAAEGE SGQVSSGSGL GMGSGLKPNG RKVCTGRGGA CLAALRVHAT  1080
GGGLGMVVGV SLQQLSRSSQ RNVGLATRHF GHGSPNRTVK QTKKKLAASS SPPQPLAAAS  1140
APKRQGLNSI EGKKGVRKTS SVRQGWRRES AQRVLKKRIA MQVGREEKRR RGGGLLRNQV  1200
GHGRESSSGG TSPSPNLSKN SDDDDDEEEE DEEDEEDEEE EYNDDDNYEE EDEEDEEEEE  1260
EEECPGKRLA WAVRKRNNHD SSGKAEVATS AEQHLDRRDL GRGGLVNATH CGEKVGRRNR  1320
AEEPVGTKPG SARVCVECGT MKTPLWRNGP RGPKSLCNAC GIRFKKERKA LALAEAQAQA  1380
QAQANAEGNE QQENSSRGGK LVSSAPCRKG KTTVGSAVKS KKHLHLKNQK RKTAGETAAS  1440
VTDASDGTIA TTVSMEAVKA DVNAAPTEGC QCSSRQHSPC PFASDPPPSA SLQTQTTSDP  1500
PPVSLPTQTG HAHHKMTNYS SQCHVADAPD KAVSSAKLDA NKEEGNGNAT GIGAQDDGHG  1560
GDGHSAIRGG EMVAECGDRV GSSADSSVTL QGPPAMVSGP LKRKWKRMMG RSDPAVHESM  1620
QIQRVSIAGS GHSRCVELPV NWVAQGKKKV RERNGMAAIM DGMPMDDQHG EGKNNLLLEM  1680
EFGGCGGTAD EVQGAILLMT LFKGCPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1167	1178	RRESAQRVLKKR
2	1176	1191	KKRIAMQVGREEKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	2e-15	GATA family protein